Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KPL75_RS23920 Genome accession   NZ_CP076653
Coordinates   4593906..4594193 (+) Length   95 a.a.
NCBI ID   WP_000648281.1    Uniprot ID   -
Organism   Bacillus sp. NP247     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4588906..4599193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPL75_RS23900 (KPL75_23890) - 4590100..4590299 (+) 200 Protein_4674 DUF4083 domain-containing protein -
  KPL75_RS23905 (KPL75_23895) - 4590313..4590774 (+) 462 WP_219918045.1 NUDIX hydrolase -
  KPL75_RS23910 (KPL75_23900) nadE 4590818..4591636 (-) 819 WP_219918046.1 ammonia-dependent NAD(+) synthetase -
  KPL75_RS23915 (KPL75_23905) - 4591907..4593787 (+) 1881 WP_219918047.1 FtsX-like permease family protein -
  KPL75_RS23920 (KPL75_23910) abrB 4593906..4594193 (+) 288 WP_000648281.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KPL75_RS23925 (KPL75_23915) - 4594656..4595834 (+) 1179 WP_219918048.1 tyrosine-type recombinase/integrase -
  KPL75_RS23930 (KPL75_23920) - 4595864..4597999 (+) 2136 Protein_4680 tyrosine-type recombinase/integrase -
  KPL75_RS23935 (KPL75_23925) - 4597992..4598387 (+) 396 WP_113710322.1 DUF6262 family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10662.43 Da        Isoelectric Point: 5.8623

>NTDB_id=577025 KPL75_RS23920 WP_000648281.1 4593906..4594193(+) (abrB) [Bacillus sp. NP247]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=577025 KPL75_RS23920 WP_000648281.1 4593906..4594193(+) (abrB) [Bacillus sp. NP247]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTAAGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGCGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAAAAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

95.789

0.547