Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KPL75_RS21880 Genome accession   NZ_CP076653
Coordinates   4188413..4189015 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus sp. NP247     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4183413..4194015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPL75_RS21860 (KPL75_21850) dnaD 4183726..4184433 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  KPL75_RS21865 (KPL75_21855) nth 4184449..4185096 (+) 648 WP_000933020.1 endonuclease III -
  KPL75_RS21870 (KPL75_21860) - 4185100..4185618 (+) 519 WP_219917763.1 YpoC family protein -
  KPL75_RS21875 (KPL75_21865) - 4185644..4188346 (-) 2703 WP_219917764.1 PBP1A family penicillin-binding protein -
  KPL75_RS21880 (KPL75_21870) recU 4188413..4189015 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  KPL75_RS21885 (KPL75_21875) - 4189119..4190144 (+) 1026 WP_219917765.1 DUF2515 domain-containing protein -
  KPL75_RS27725 - 4190490..4190636 (-) 147 WP_307838389.1 phage portal protein -
  KPL75_RS21890 (KPL75_21880) - 4190755..4190997 (+) 243 WP_219917766.1 hypothetical protein -
  KPL75_RS21895 (KPL75_21885) - 4191015..4191359 (+) 345 WP_219917767.1 YppE family protein -
  KPL75_RS21900 (KPL75_21890) - 4191537..4191728 (-) 192 WP_219917768.1 YppF family protein -
  KPL75_RS21905 (KPL75_21895) - 4191906..4192712 (+) 807 WP_219917769.1 YppG family protein -
  KPL75_RS21910 (KPL75_21900) - 4192870..4193283 (+) 414 WP_219917770.1 CotD family spore coat protein -
  KPL75_RS21915 (KPL75_21905) - 4193340..4193894 (+) 555 WP_219917771.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=577024 KPL75_RS21880 WP_002030800.1 4188413..4189015(-) (recU) [Bacillus sp. NP247]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=577024 KPL75_RS21880 WP_002030800.1 4188413..4189015(-) (recU) [Bacillus sp. NP247]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTAGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
CATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625