Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KPL75_RS20490 Genome accession   NZ_CP076653
Coordinates   3932746..3933069 (-) Length   107 a.a.
NCBI ID   WP_002064339.1    Uniprot ID   J8AHG1
Organism   Bacillus sp. NP247     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3927746..3938069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPL75_RS20465 (KPL75_20460) - 3928018..3929304 (+) 1287 WP_219917540.1 D-alanyl-D-alanine carboxypeptidase family protein -
  KPL75_RS20470 (KPL75_20465) sipW 3929506..3930075 (+) 570 WP_219917541.1 signal peptidase I SipW -
  KPL75_RS20475 (KPL75_20470) - 3930140..3930727 (+) 588 WP_219917542.1 CalY family protein -
  KPL75_RS20480 (KPL75_20475) - 3930875..3931705 (+) 831 WP_219917543.1 DUF4047 domain-containing protein -
  KPL75_RS20485 (KPL75_20480) calY 3932071..3932664 (+) 594 WP_219917544.1 biofilm matrix protein CalY -
  KPL75_RS20490 (KPL75_20485) sinR 3932746..3933069 (-) 324 WP_002064339.1 helix-turn-helix domain-containing protein Regulator
  KPL75_RS20495 (KPL75_20490) - 3933150..3933284 (-) 135 WP_000276220.1 anti-repressor SinI family protein -
  KPL75_RS20500 (KPL75_20495) inhA1 3933626..3936016 (+) 2391 WP_219917545.1 M6 family metalloprotease immune inhibitor InhA1 -
  KPL75_RS20505 (KPL75_20500) - 3936188..3937555 (+) 1368 WP_219917546.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.06 Da        Isoelectric Point: 7.2050

>NTDB_id=577022 KPL75_RS20490 WP_002064339.1 3932746..3933069(-) (sinR) [Bacillus sp. NP247]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=577022 KPL75_RS20490 WP_002064339.1 3932746..3933069(-) (sinR) [Bacillus sp. NP247]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCACTAACAGAACTCGCAGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATATCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACGCAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AHG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692