Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG49_RS00100 Genome accession   NZ_CP094173
Coordinates   23852..25054 (+) Length   400 a.a.
NCBI ID   WP_245052291.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0001     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18852..30054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG49_RS00085 (MPG49_00085) - 20922..21062 (+) 141 WP_015643441.1 hypothetical protein -
  MPG49_RS00090 (MPG49_00090) - 21055..22194 (+) 1140 WP_245052287.1 VirB8/TrbF family protein -
  MPG49_RS00095 (MPG49_00095) - 22191..23855 (+) 1665 WP_245052289.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG49_RS00100 (MPG49_00100) comB10 23852..25054 (+) 1203 WP_245052291.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG49_RS00105 (MPG49_00105) - 25038..27299 (+) 2262 WP_245052293.1 collagen-like protein -
  MPG49_RS00110 (MPG49_00110) - 27312..28289 (+) 978 WP_245052295.1 hypothetical protein -
  MPG49_RS00115 (MPG49_00115) - 28307..28579 (+) 273 WP_001917649.1 hypothetical protein -
  MPG49_RS00120 (MPG49_00120) - 28584..29528 (+) 945 WP_033582549.1 CpaF/VirB11 family protein -
  MPG49_RS00125 (MPG49_00125) - 29525..30043 (+) 519 WP_120869111.1 replication regulatory RepB family protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44752.40 Da        Isoelectric Point: 9.9018

>NTDB_id=577007 MPG49_RS00100 WP_245052291.1 23852..25054(+) (comB10) [Helicobacter pylori strain Hpfe0001]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPINSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=577007 MPG49_RS00100 WP_245052291.1 23852..25054(+) (comB10) [Helicobacter pylori strain Hpfe0001]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTACAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACGATTACGGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAATTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACGATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTCCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.417

98.25

0.515