Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KPL75_RS14055 Genome accession   NZ_CP076653
Coordinates   2674001..2675128 (+) Length   375 a.a.
NCBI ID   WP_219916778.1    Uniprot ID   -
Organism   Bacillus sp. NP247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2669001..2680128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPL75_RS14025 (KPL75_14020) spoIIIJ 2669037..2669804 (-) 768 WP_144506036.1 YidC family membrane integrase SpoIIIJ -
  KPL75_RS14030 (KPL75_14025) rnpA 2669857..2670204 (-) 348 WP_219916776.1 ribonuclease P protein component -
  KPL75_RS14035 (KPL75_14030) rpmH 2670281..2670415 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  KPL75_RS14040 (KPL75_14035) dnaA 2670979..2672319 (+) 1341 WP_219916777.1 chromosomal replication initiator protein DnaA -
  KPL75_RS14045 (KPL75_14040) dnaN 2672502..2673647 (+) 1146 WP_002144553.1 DNA polymerase III subunit beta -
  KPL75_RS14050 (KPL75_14045) yaaA 2673776..2673988 (+) 213 WP_002016484.1 S4 domain-containing protein YaaA -
  KPL75_RS14055 (KPL75_14050) recF 2674001..2675128 (+) 1128 WP_219916778.1 DNA replication/repair protein RecF Machinery gene
  KPL75_RS14060 (KPL75_14055) gyrB 2675167..2677089 (+) 1923 WP_219916779.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KPL75_RS14065 (KPL75_14060) gyrA 2677178..2679646 (+) 2469 WP_219916780.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43502.73 Da        Isoelectric Point: 6.8417

>NTDB_id=577003 KPL75_RS14055 WP_219916778.1 2674001..2675128(+) (recF) [Bacillus sp. NP247]
MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGNIKGRLQRRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIIYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCETDRK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=577003 KPL75_RS14055 WP_219916778.1 2674001..2675128(+) (recF) [Bacillus sp. NP247]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAGCATTTAGAGCTTTCCTTTGAGGATAAAGTCAATGT
AATTATTGGTGAAAATGCGCAAGGGAAAACGAATCTAATGGAAGCGATTTATGTATTGGCGATGGCGAAATCCCATAGAA
CTTCGAACGATCGTGAACTCATTCGCTGGGATGAGGATTATGGTAATATAAAAGGTAGATTACAAAGGCGAAATAGTTCT
TTATCCTTAGAATTAAATATTTCCAAAAAAGGTAAAAAGGCAAAGTTAAATCAATTAGAACAGCAAAAATTGAGCCAGTA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTAGATATGGAACTTGGACAAATAGCTCCGGTCTATTTGTATGAATTAAGCCAATATCAAAAGGTACTCACGCAACGA
AATCATTTACTTAAGAAGATGCAAGGGAATAGTAAAAATGAGGAAACGATGCTGGATGTGTTTACACTCCAACTTATTGA
GCATGGTGCGAAAATTTTGCGAAAACGTTTTGAGTTTTTACATTTACTACAAGAATGGGCTGCTCCAATTCACCGCGGAA
TTAGCAGGGGATTAGAGGAGTTAGAAATCATCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTTCGTGGTACAACTTTACTCGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACAACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATATACTCAGAGGTTAAGGAATATCCAATCCTTTTATTAGATGATGTGTTATCA
GAACTAGATGATTATCGTCAATCACATCTTTTAAATACGATTCAAGGAAAAGTACAAACATTTGTGACCACGACGAGTGT
CGACGGAATTGAACACGAAACATTGAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAACAGACA
GAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.12

98.133

0.659