Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG23_RS05145 Genome accession   NZ_CP094172
Coordinates   1093821..1094996 (+) Length   391 a.a.
NCBI ID   WP_245087586.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088821..1099996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG23_RS05120 (MPG23_05120) - 1089081..1089977 (+) 897 WP_245087577.1 response regulator -
  MPG23_RS05125 (MPG23_05125) - 1090292..1091069 (+) 778 Protein_1000 5'-3' exonuclease -
  MPG23_RS05130 (MPG23_05130) - 1091159..1092409 (-) 1251 WP_245087580.1 outer membrane family protein -
  MPG23_RS05135 (MPG23_05135) - 1092577..1093443 (+) 867 WP_245087583.1 DnaJ C-terminal domain-containing protein -
  MPG23_RS05140 (MPG23_05140) - 1093453..1093824 (+) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG23_RS05145 (MPG23_05145) rarA 1093821..1094996 (+) 1176 WP_245087586.1 replication-associated recombination protein A Machinery gene
  MPG23_RS05150 (MPG23_05150) fur 1095155..1095607 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG23_RS05155 (MPG23_05155) - 1095627..1096124 (-) 498 WP_245087590.1 DUF2147 domain-containing protein -
  MPG23_RS05160 (MPG23_05160) - 1096121..1096657 (-) 537 WP_245087593.1 YhcH/YjgK/YiaL family protein -
  MPG23_RS05165 (MPG23_05165) fliY 1096686..1097549 (-) 864 WP_245087596.1 flagellar motor switch protein FliY -
  MPG23_RS05170 (MPG23_05170) fliM 1097553..1098617 (-) 1065 WP_001919332.1 flagellar motor switch protein FliM -
  MPG23_RS05175 (MPG23_05175) - 1098610..1099386 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG23_RS05180 (MPG23_05180) - 1099364..1099678 (-) 315 WP_245087599.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43874.50 Da        Isoelectric Point: 8.1225

>NTDB_id=576986 MPG23_RS05145 WP_245087586.1 1093821..1094996(+) (rarA) [Helicobacter pylori strain Hpfe0002]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKIQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLNKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576986 MPG23_RS05145 WP_245087586.1 1093821..1094996(+) (rarA) [Helicobacter pylori strain Hpfe0002]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAATCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAAACAAGCTTTGTGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCACTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394