Detailed information
Bioinformatically predicted
Overview
| Name | xerS | Type | Machinery gene |
| Locus tag | LEUCM_RS07325 | Genome accession | NZ_AP017929 |
| Coordinates | 1466065..1467123 (-) | Length | 352 a.a. |
| NCBI ID | WP_025015780.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1461065..1472123
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LEUCM_RS07305 (LACBS_01446) | - | 1461982..1462905 (+) | 924 | WP_011374673.1 | manganese-dependent inorganic pyrophosphatase | - |
| LEUCM_RS07310 (LACBS_01447) | - | 1462962..1463315 (+) | 354 | WP_025015777.1 | hypothetical protein | - |
| LEUCM_RS07315 (LACBS_01448) | - | 1463416..1465209 (+) | 1794 | WP_025015778.1 | heavy metal translocating P-type ATPase | - |
| LEUCM_RS07320 (LACBS_01449) | thiT | 1465249..1465851 (-) | 603 | WP_025015779.1 | energy-coupled thiamine transporter ThiT | - |
| LEUCM_RS07325 (LACBS_01450) | xerS | 1466065..1467123 (-) | 1059 | WP_025015780.1 | tyrosine recombinase XerS | Machinery gene |
| LEUCM_RS07330 (LACBS_01451) | - | 1467943..1468950 (-) | 1008 | WP_025015781.1 | NADP-dependent oxidoreductase | - |
| LEUCM_RS07335 (LACBS_01452) | - | 1468952..1469533 (-) | 582 | WP_011374667.1 | TetR/AcrR family transcriptional regulator | - |
| LEUCM_RS07340 (LACBS_01453) | - | 1469659..1470501 (-) | 843 | WP_011374666.1 | DegV family protein | - |
| LEUCM_RS07345 (LACBS_01454) | - | 1470530..1471168 (-) | 639 | WP_016265118.1 | hemolysin III family protein | - |
| LEUCM_RS07350 (LACBS_01455) | - | 1471329..1471829 (+) | 501 | WP_025015782.1 | DUF1836 domain-containing protein | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 40719.63 Da Isoelectric Point: 9.1623
>NTDB_id=57696 LEUCM_RS07325 WP_025015780.1 1466065..1467123(-) (xerS) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE
Nucleotide
Download Length: 1059 bp
>NTDB_id=57696 LEUCM_RS07325 WP_025015780.1 1466065..1467123(-) (xerS) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xerS | Streptococcus pneumoniae R6 |
46.067 |
100 |
0.466 |