Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KP013_RS14185 Genome accession   NZ_CP076646
Coordinates   2917557..2918186 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GD33     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912557..2923186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP013_RS14170 (KP013_14170) helD 2912799..2914853 (-) 2055 WP_001295354.1 DNA helicase IV -
  KP013_RS14175 (KP013_14175) yccF 2914976..2915422 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KP013_RS14180 (KP013_14180) yccS 2915432..2917594 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KP013_RS14185 (KP013_14185) sxy/tfoX 2917557..2918186 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KP013_RS14190 (KP013_14190) sulA 2918405..2918914 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KP013_RS14195 (KP013_14195) ompA 2919271..2920311 (+) 1041 WP_000750416.1 porin OmpA -
  KP013_RS14200 (KP013_14200) matP 2920387..2920839 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KP013_RS14205 (KP013_14205) ycbZ 2921025..2922785 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=576916 KP013_RS14185 WP_000839153.1 2917557..2918186(-) (sxy/tfoX) [Escherichia coli strain GD33]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=576916 KP013_RS14185 WP_000839153.1 2917557..2918186(-) (sxy/tfoX) [Escherichia coli strain GD33]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1