Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPF82_RS05250 Genome accession   NZ_CP094170
Coordinates   1103924..1105849 (+) Length   641 a.a.
NCBI ID   WP_245089142.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1098924..1110849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF82_RS05225 (MPF82_05225) hofB 1099115..1100554 (-) 1440 WP_245089133.1 outer membrane beta-barrel protein HofB -
  MPF82_RS05230 (MPF82_05230) pyrB 1100851..1101780 (-) 930 WP_245089136.1 aspartate carbamoyltransferase -
  MPF82_RS05235 (MPF82_05235) - 1101847..1102362 (+) 516 WP_000523558.1 hypothetical protein -
  MPF82_RS05240 (MPF82_05240) - 1102362..1103069 (+) 708 WP_245089139.1 TlyA family RNA methyltransferase -
  MPF82_RS05245 (MPF82_05245) - 1103035..1103877 (+) 843 WP_154502069.1 bifunctional riboflavin kinase/FAD synthetase -
  MPF82_RS05250 (MPF82_05250) recP/tkt 1103924..1105849 (+) 1926 WP_245089142.1 transketolase Machinery gene
  MPF82_RS05255 (MPF82_05255) - 1105846..1108182 (+) 2337 WP_245089145.1 PD-(D/E)XK nuclease family protein -
  MPF82_RS05260 (MPF82_05260) - 1108179..1110779 (+) 2601 WP_245089148.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70385.63 Da        Isoelectric Point: 6.5780

>NTDB_id=576909 MPF82_RS05250 WP_245089142.1 1103924..1105849(+) (recP/tkt) [Helicobacter pylori strain Hpfe0004]
MRLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGISLEALWEKSLSPKAKE
KIHALKGFDFSTINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=576909 MPF82_RS05250 WP_245089142.1 1103924..1105849(+) (recP/tkt) [Helicobacter pylori strain Hpfe0004]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGTTGCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAATAGAGATAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGTATTGAAATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGTTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGATAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCATCTCAACCTAAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAGGTTAAGATGCGGTTTTTAGCACAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCTTAAA
TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCATTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGGTTTTGATTTTAGCACCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGTTTTTTAGGGGGGAGCGCGGATTTAGCCCCAT
CCAATAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCTATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGTGGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.782

100

0.424