Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KQH25_RS06800 Genome accession   NZ_CP076644
Coordinates   1358517..1360208 (+) Length   563 a.a.
NCBI ID   WP_003738883.1    Uniprot ID   A0A0B8RFK2
Organism   Listeria monocytogenes strain UKVDL4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1353517..1365208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQH25_RS06775 (KQH25_06775) - 1353667..1354548 (+) 882 WP_069008827.1 polyprenyl synthetase family protein -
  KQH25_RS06780 (KQH25_06780) - 1354747..1354947 (+) 201 WP_003719639.1 cold-shock protein -
  KQH25_RS06785 (KQH25_06785) dxs 1355114..1357033 (+) 1920 WP_077954647.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KQH25_RS06790 (KQH25_06790) - 1357030..1357854 (+) 825 WP_003729890.1 TlyA family RNA methyltransferase -
  KQH25_RS06795 (KQH25_06795) argR 1358045..1358494 (+) 450 WP_003722493.1 transcriptional regulator ArgR -
  KQH25_RS06800 (KQH25_06800) recN 1358517..1360208 (+) 1692 WP_003738883.1 DNA repair protein RecN Machinery gene
  KQH25_RS06805 (KQH25_06805) - 1360336..1361202 (+) 867 WP_070212068.1 phosphate acyltransferase -
  KQH25_RS06810 (KQH25_06810) buk 1361339..1362406 (+) 1068 WP_012581357.1 butyrate kinase -
  KQH25_RS06815 (KQH25_06815) lpdA 1362421..1363848 (+) 1428 WP_070212069.1 dihydrolipoyl dehydrogenase -
  KQH25_RS06820 (KQH25_06820) - 1363873..1364868 (+) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63518.26 Da        Isoelectric Point: 5.1296

>NTDB_id=576858 KQH25_RS06800 WP_003738883.1 1358517..1360208(+) (recN) [Listeria monocytogenes strain UKVDL4]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=576858 KQH25_RS06800 WP_003738883.1 1358517..1360208(+) (recN) [Listeria monocytogenes strain UKVDL4]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCATGGAGAAGAGCGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATTAATGGCAAGCTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTTGCTTCTGACAAAATAAAGCCAGCATTA
ACCAAGTACCAAACGAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACGAAAAATGAGCGAGAATT
AGCGCAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCTAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGCCAAATGGAAGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGCGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGTCAAATTAGGCAATCACTGGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGCAAAACC
ATTGAAGATATTATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTAAAAGCAGAACTAACAAAACAGGCGAATACACTAACAGAAATCCGTAAAAAAGCGG
CTGTTACGTTAGAAAAGCAAATCAAACAAGAATTAAATCATTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTTGAA
GCAAATAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGCCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGCCATTTGCCTCAAGTTGCAGCAATGGCGAACCACCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGAGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACTGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8RFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535