Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG70_RS01490 Genome accession   NZ_CP094168
Coordinates   292165..293214 (-) Length   349 a.a.
NCBI ID   WP_245062399.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0006     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 287165..298214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG70_RS01470 (MPG70_01470) rpsL 288258..288665 (+) 408 WP_001142319.1 30S ribosomal protein S12 -
  MPG70_RS01475 (MPG70_01475) rpsG 288681..289148 (+) 468 WP_001254366.1 30S ribosomal protein S7 -
  MPG70_RS01480 (MPG70_01480) fusA 289160..291238 (+) 2079 WP_000101843.1 elongation factor G -
  MPG70_RS01485 (MPG70_01485) - 291756..291974 (+) 219 WP_000744170.1 hypothetical protein -
  MPG70_RS01490 (MPG70_01490) waaF 292165..293214 (-) 1050 WP_245062399.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG70_RS01495 (MPG70_01495) hisS 293276..294604 (+) 1329 WP_140488565.1 histidine--tRNA ligase -
  MPG70_RS01500 (MPG70_01500) asd 294591..295631 (+) 1041 WP_245062401.1 aspartate-semialdehyde dehydrogenase -
  MPG70_RS01505 (MPG70_01505) - 296067..297113 (+) 1047 WP_245062403.1 DUF874 family protein -
  MPG70_RS01510 (MPG70_01510) - 297343..298086 (-) 744 WP_180533406.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39579.41 Da        Isoelectric Point: 9.4838

>NTDB_id=576855 MPG70_RS01490 WP_245062399.1 292165..293214(-) (waaF) [Helicobacter pylori strain Hpfe0006]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSN
NTYNLCGKTSIEELIECIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEEETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576855 MPG70_RS01490 WP_245062399.1 292165..293214(-) (waaF) [Helicobacter pylori strain Hpfe0006]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATCCAAT
AACACTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAGAAGAAA
CTCGTCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364