Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KNV97_RS19935 Genome accession   NZ_CP076643
Coordinates   3001604..3002611 (+) Length   335 a.a.
NCBI ID   WP_136485348.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2996604..3007611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS19920 (KNV97_19920) - 2996993..2998270 (-) 1278 WP_136485354.1 malic enzyme-like NAD(P)-binding protein -
  KNV97_RS19925 (KNV97_19925) rpmE 2998507..2998725 (-) 219 WP_136485352.1 50S ribosomal protein L31 -
  KNV97_RS19930 (KNV97_19930) priA 2999078..3001279 (+) 2202 WP_218562632.1 primosomal protein N' -
  KNV97_RS19935 (KNV97_19935) cytR 3001604..3002611 (+) 1008 WP_136485348.1 DNA-binding transcriptional regulator CytR Regulator
  KNV97_RS19940 (KNV97_19940) - 3002740..3003294 (+) 555 WP_218562633.1 SPOR domain-containing protein -
  KNV97_RS19945 (KNV97_19945) hslV 3003441..3003998 (+) 558 WP_218562634.1 ATP-dependent protease subunit HslV -
  KNV97_RS19950 (KNV97_19950) hslU 3004032..3005363 (+) 1332 WP_136485341.1 HslU--HslV peptidase ATPase subunit -
  KNV97_RS19955 (KNV97_19955) - 3005490..3006407 (+) 918 WP_136485339.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  KNV97_RS19960 (KNV97_19960) rraA 3006483..3007037 (+) 555 WP_136485337.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36756.01 Da        Isoelectric Point: 5.0731

>NTDB_id=576835 KNV97_RS19935 WP_136485348.1 3001604..3002611(+) (cytR) [Vibrio ostreae strain OG9-811]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPDTAVLCQFRQQGYQQALRRSGITRNPDYSVSGDFSFESGAQAVRQLLALSEPPTA
IFCHNDTMAIGAIQEAKRLGTRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGNDVQAGSRLLE
TQLVVRDSAAPPCAI

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=576835 KNV97_RS19935 WP_136485348.1 3001604..3002611(+) (cytR) [Vibrio ostreae strain OG9-811]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCAACGGCGACCGTATCGCGTGCTCTGATGAATCCCGAGAA
AGTCTCATCCTCGACCCGTAAACGGGTTGAAGAGGCGGTGTTAGAAGCTGGTTATTCCCCTAACTCTCTCGCGCGCAATC
TGCGTCGCAATGAGTCCAAAACGATTGTGGCCATTGTGCCGGATATCTGTGACCCGTATTACACCGAGATCATCCGCGGC
ATTGAAGATGCGGCGATGGAACACGGTTATCTGGTGCTGCTGGGTGACAGCGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTCACCAAGCAGGCGGACGGTATGTTGCTGCTCGGGACCGACCTGCCGTTTGATGTCAGTAAGCCGG
AACAGAAAAACCTGCCGCCGATGGTGATGGCGTGTGAGTTTGCCCCGGAACTGGAGCTGCCCACGGTACATATTGATAAC
CTGACCTCGGCGTTTGAAGCGGTGAACTATCTGACCCAGATGGGCCACAAACGGGTGGCGCAAATTGCCGGCCCGGATAC
GGCCGTTCTGTGCCAGTTCCGCCAGCAAGGTTACCAGCAGGCGCTGCGCCGCTCCGGGATTACCCGCAATCCAGACTACA
GTGTGAGCGGTGATTTCTCATTTGAATCGGGTGCTCAGGCGGTGCGTCAGCTGCTGGCGTTGTCCGAGCCGCCGACGGCG
ATTTTCTGCCACAACGATACCATGGCGATTGGGGCGATTCAGGAAGCCAAACGTCTGGGTACGCGAGTGCCGCAGGATCT
TTCGGTGGTCGGTTTCGATGACATTCAGTTTGCCCAGTACTGCGATCCACCGCTGACCACCATTTCTCAGCCGCGTTATG
AGATTGGCCGCCAGGCAATGCTGATGATGCTGGAATTGCTGCGCGGCAACGATGTTCAGGCCGGTTCACGTTTACTGGAA
ACCCAGCTGGTGGTACGCGACAGCGCGGCTCCGCCATGTGCAATCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.867

99.104

0.91
  cytR Vibrio parahaemolyticus RIMD 2210633

90.964

99.104

0.901