Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KNV97_RS15935 Genome accession   NZ_CP076643
Coordinates   2156602..2157120 (-) Length   172 a.a.
NCBI ID   WP_136483322.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2151602..2162120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS15910 (KNV97_15910) rpsP 2152003..2152251 (-) 249 WP_136483326.1 30S ribosomal protein S16 -
  KNV97_RS15915 (KNV97_15915) - 2152245..2152478 (-) 234 WP_218562307.1 hypothetical protein -
  KNV97_RS15920 (KNV97_15920) ffh 2152554..2153933 (-) 1380 WP_136483325.1 signal recognition particle protein -
  KNV97_RS15925 (KNV97_15925) - 2154261..2155055 (+) 795 WP_136483324.1 inner membrane protein YpjD -
  KNV97_RS15930 (KNV97_15930) - 2155188..2156462 (+) 1275 WP_218562308.1 HlyC/CorC family transporter -
  KNV97_RS15935 (KNV97_15935) luxS 2156602..2157120 (-) 519 WP_136483322.1 S-ribosylhomocysteine lyase Regulator
  KNV97_RS15940 (KNV97_15940) - 2157146..2157751 (-) 606 WP_136483321.1 hypothetical protein -
  KNV97_RS15945 (KNV97_15945) gshA 2157768..2159333 (-) 1566 WP_218562309.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18800.60 Da        Isoelectric Point: 4.8114

>NTDB_id=576820 KNV97_RS15935 WP_136483322.1 2156602..2157120(-) (luxS) [Vibrio ostreae strain OG9-811]
MPLLDSFTVDHTRMSAPAVRVAKTMQTPKGDTITVFDLRFTLPNQDILSERGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEDQVASAWLAAMQDVLKVEGQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGISVNKNDELA
LPESMLQELKVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=576820 KNV97_RS15935 WP_136483322.1 2156602..2157120(-) (luxS) [Vibrio ostreae strain OG9-811]
ATGCCATTATTAGACAGCTTTACCGTAGACCACACTCGCATGAGTGCGCCGGCGGTACGTGTGGCCAAGACCATGCAAAC
ACCAAAGGGCGATACCATCACGGTATTTGACCTGCGTTTCACCCTGCCGAATCAGGATATTCTGTCAGAGCGTGGTATCC
ATACGCTGGAGCACCTGTATGCCGGCTTTATGCGTGCCCACCTTAATGGGGCTAACGTCGAAATCATCGATATCTCGCCA
ATGGGCTGTCGCACGGGTTTCTATATGAGCCTGATTGGTGCGCCAAGCGAAGACCAGGTTGCAAGCGCGTGGCTGGCAGC
GATGCAGGATGTACTGAAAGTCGAAGGTCAGGATAAAATCCCTGAGCTGAACGAGTACCAGTGCGGTACCGCAGCGATGC
ACTCACTGACCGAAGCGAAAGCGATTGCAGAGAAGGTGATTGCGGCCGGTATTTCAGTCAACAAGAACGACGAACTGGCC
TTGCCGGAGTCGATGCTGCAAGAGCTGAAAGTGAACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.535

100

0.895