Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KNV97_RS13910 Genome accession   NZ_CP076643
Coordinates   1711915..1713279 (-) Length   454 a.a.
NCBI ID   WP_136484404.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1706915..1718279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS13875 (KNV97_13875) moaE 1707312..1707768 (-) 457 Protein_1519 molybdopterin synthase catalytic subunit MoaE -
  KNV97_RS13880 (KNV97_13880) moaD 1707770..1708015 (-) 246 WP_136484348.1 molybdopterin synthase sulfur carrier subunit -
  KNV97_RS13885 (KNV97_13885) moaC 1708012..1708491 (-) 480 WP_136484349.1 cyclic pyranopterin monophosphate synthase MoaC -
  KNV97_RS13890 (KNV97_13890) moaB 1708503..1709015 (-) 513 WP_136484350.1 molybdenum cofactor biosynthesis protein B -
  KNV97_RS13895 (KNV97_13895) moaA 1709124..1710113 (-) 990 WP_136484351.1 GTP 3',8-cyclase MoaA -
  KNV97_RS13900 (KNV97_13900) - 1710444..1711349 (+) 906 WP_136484352.1 YvcK family protein -
  KNV97_RS13905 (KNV97_13905) luxU 1711570..1711908 (-) 339 WP_136484353.1 quorum-sensing phosphorelay protein LuxU -
  KNV97_RS13910 (KNV97_13910) luxO 1711915..1713279 (-) 1365 WP_136484404.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  KNV97_RS13915 (KNV97_13915) uvrB 1713566..1715596 (-) 2031 WP_218562144.1 excinuclease ABC subunit UvrB -
  KNV97_RS13925 (KNV97_13925) - 1716414..1716938 (+) 525 WP_256611942.1 integrase arm-type DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50486.53 Da        Isoelectric Point: 5.1690

>NTDB_id=576818 KNV97_RS13910 WP_136484404.1 1711915..1713279(-) (luxO) [Vibrio ostreae strain OG9-811]
MVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESIAKRTPDLILLDLRLPDMTGMDVLHEVKKQSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDTDSTNQNYQGFIGSSHNMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLGY
MSKEEGKGFVRLAPGVVERFRKYEWPGNVRQLQNVLRNVVVLNEGSEIALEMLPPPLSQPIESENILPNVGQGRISVHEI
FPLWMTEKQAIENAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKEQEKENEK

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=576818 KNV97_RS13910 WP_136484404.1 1711915..1713279(-) (luxO) [Vibrio ostreae strain OG9-811]
ATGGTCGAAGACACGGCTTCGGTCGCGGCGCTGTATCGTTCTTATCTGACTCCTCTGGAGATCGATATCAATATTGTCGG
TACCGGGCGTGACGCGATCGAAAGTATCGCGAAACGGACTCCGGATCTGATCCTGCTCGATTTACGCCTGCCAGATATGA
CGGGTATGGATGTGCTGCACGAAGTGAAGAAGCAATCGCCGGATGTCCCGGTGATTTTCATGACAGCGCACGGCTCTATC
GATACCGCAGTGGAAGCGATGCGCCACGGTGCTCAGGATTTCCTTATCAAACCGTGTGAAGCGGACCGTTTGCGTGTCAC
AGTAAATAATGCGATCCGCAAGGCCAGCAAGCTTAAAAATGACACCGACAGCACCAATCAGAACTATCAGGGCTTCATCG
GCAGCAGTCACAATATGCAAGCGGTCTATCGCACGATTGACTCGGCTGCGAGCAGTAAAGCCAGTATCTTTATCACCGGT
GAAAGCGGTACAGGTAAAGAAGTGTGTGCCGAAGCCATCCATGCCGCCAGCAAGCGCGGTGACAAGCCGTTCATCGCGAT
TAACTGTGCTGCGATTCCAAAAGACTTGATCGAAAGTGAGTTGTTCGGCCACGTAAAAGGTGCCTTTACCGGTGCTGCCA
CCGATCGTCAGGGTGCGGCTGAACTGGCAGACGGCGGCACTCTGTTTTTGGATGAATTGTGTGAAATGGATCTGGACTTA
CAGACCAAGCTGTTGCGCTTTATCCAGACCGGTACCTTTCAGAAAGTCGGTTCATCGAAAATGAAAAGTGTCGATGTCCG
TTTTGTCTGTGCAACCAACCGCGACCCCTGGAAAGAGGTGCAGGAAGGACGTTTTCGTGAAGACTTATACTACCGTTTGT
ACGTGATTCCGCTCCATTTACCGCCACTGCGTGAGCGTGGTGACGATGTGATTGAAATTGCTTATTCCCTGCTGGGCTAC
ATGTCTAAAGAAGAAGGCAAAGGCTTTGTCCGCCTGGCTCCGGGTGTGGTCGAACGGTTCAGAAAGTACGAGTGGCCGGG
CAATGTGCGCCAGCTGCAGAACGTGCTGCGTAATGTGGTGGTATTGAATGAAGGCAGTGAGATCGCGCTTGAAATGCTGC
CACCGCCGCTGAGTCAGCCGATTGAATCGGAAAATATCTTGCCAAATGTTGGTCAGGGTCGCATTTCTGTGCATGAAATT
TTCCCATTATGGATGACAGAGAAACAGGCGATTGAAAACGCTATCGAAGCGTGTGATGGTAATATTCCGCGTGCGGCGGG
TTATTTGGATGTTAGTCCATCGACCATTTATCGTAAGCTGCAGACCTGGAACGAAAAAGAACAAGAAAAGGAAAATGAAA
AGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-441)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.933

98.458

0.885