Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG42_RS01490 Genome accession   NZ_CP094167
Coordinates   296138..297187 (-) Length   349 a.a.
NCBI ID   WP_245028624.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0007     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 291138..302187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG42_RS01470 (MPG42_01470) rpsL 291838..292245 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG42_RS01475 (MPG42_01475) rpsG 292261..292728 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG42_RS01480 (MPG42_01480) fusA 292740..294818 (+) 2079 WP_000101843.1 elongation factor G -
  MPG42_RS01485 (MPG42_01485) - 295565..295945 (+) 381 WP_000744161.1 hypothetical protein -
  MPG42_RS01490 (MPG42_01490) waaF 296138..297187 (-) 1050 WP_245028624.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG42_RS01495 (MPG42_01495) hisS 297249..298577 (+) 1329 WP_245013361.1 histidine--tRNA ligase -
  MPG42_RS01500 (MPG42_01500) asd 298564..299604 (+) 1041 WP_245013360.1 aspartate-semialdehyde dehydrogenase -
  MPG42_RS01505 (MPG42_01505) - 300015..301136 (+) 1122 WP_245028626.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39507.35 Da        Isoelectric Point: 9.5731

>NTDB_id=576818 MPG42_RS01490 WP_245028624.1 296138..297187(-) (waaF) [Helicobacter pylori strain Hpfe0007]
MSLNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIECIATLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETHPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576818 MPG42_RS01490 WP_245028624.1 296138..297187(-) (waaF) [Helicobacter pylori strain Hpfe0007]
ATGAGCTTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAATATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCCAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCACCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCACTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361