Detailed information NTG0576810

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: KNV97_RS11875
• Genome accession: NZ_CP076643
• Coordinates: 1270687..1272132 (+)
• Length: 481 a.a.
• NCBI ID: WP_218563205.1
• Uniprot ID: -
• Organism: Vibrio ostreae strain OG9-811
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1265687..1277132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KNV97_RS11860 (KNV97_11860)	-	1265737..1267113 (+)	1377	WP_136484031.1	L-cystine transporter	-
KNV97_RS11865 (KNV97_11865)	-	1267316..1268365 (-)	1050	WP_136484032.1	NAD(P)-dependent alcohol dehydrogenase	-
KNV97_RS11870 (KNV97_11870)	-	1268642..1270264 (-)	1623	WP_218563204.1	methyl-accepting chemotaxis protein	-
KNV97_RS11875 (KNV97_11875)	sbcB	1270687..1272132 (+)	1446	WP_218563205.1	exodeoxyribonuclease I	Machinery gene
KNV97_RS11880 (KNV97_11880)	-	1272327..1272701 (+)	375	WP_218563206.1	CidA/LrgA family protein	-
KNV97_RS11885 (KNV97_11885)	-	1272692..1273372 (+)	681	WP_136484036.1	CidB/LrgB family autolysis modulator	-
KNV97_RS11890 (KNV97_11890)	cdd	1273592..1274482 (+)	891	WP_218563207.1	cytidine deaminase	-
KNV97_RS11895 (KNV97_11895)	-	1274803..1275684 (+)	882	WP_218563208.1	AEC family transporter	-
KNV97_RS22005	-	1275921..1276226 (+)	306	WP_256612992.1	hypothetical protein	-

Sequence

Protein

• Length: 481 a.a.
• Molecular weight: 55473.71 Da
• Isoelectric Point: 5.4304

>NTDB_id=576810 KNV97_RS11875 WP_218563205.1 1270687..1272132(+) (sbcB) [Vibrio ostreae strain OG9-811]
MKDTAPHQQQDHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDKDFNIIGEPLVIYCQLPSDYLPGPEAALITGITPQKAM
SQGLPEPEFIARIHQELSTPNTTSLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPQGIEWP
ENEDGFTSFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRTKRKLNELIDIVNMTPLMHVSGM
LGRECQYTSWVVPVAWHPTNQNAAIVVDLAKDPQPLLDLDVDALHARMYTRHDELGPDELPVPVKLIHLNKCPILAPAKT
LTAENADQIGIDRQQCLANLALIRQHPEIREKLIGLFNIEREFDNNHDVDTQLYNGFFSPTDKASMDIIRSTNPEFLGEL
GITFSDPRIEPLLFRYRARHYPWTLNESEQRRWNAHCREYFETHLPDYMLNLENLVHEHESDSKKIAILKSVYQYVEKLA
S

Nucleotide

• Length: 1446 bp

>NTDB_id=576810 KNV97_RS11875 WP_218563205.1 1270687..1272132(+) (sbcB) [Vibrio ostreae strain OG9-811]
GTGAAAGACACCGCACCCCACCAGCAGCAAGATCATCAACCGACATTCTTCTTTTTCGACTACGAAACCTGGGGCACCAG
TCCGGCGAAAGACAGACCAAGCCAGTTTGCTGGCGTACGTACCGATAAAGATTTCAATATCATTGGTGAACCACTGGTGA
TTTACTGTCAGTTACCCAGTGATTACCTGCCTGGTCCGGAAGCGGCGCTGATCACGGGCATCACTCCACAGAAAGCAATG
TCACAAGGCCTGCCTGAACCTGAATTTATTGCCCGTATCCATCAGGAACTGTCGACCCCCAACACGACCAGTCTGGGCTA
TAACAGCATTCGTTTTGATGACGAGGTAACCCGTTACACCTGCTACCGCAACTTCTTTGACCCTTATGCCTGGAGCTGGC
AAAACGGTAATTCACGCTGGGATCTGCTGGATGTAATGCGAGCCTGTCATGCTCTTCGTCCTCAGGGTATAGAATGGCCG
GAGAATGAAGACGGTTTCACCAGCTTTAAGCTTGAGCACTTATCCAAAGCCAACGGTATCGAGCATGAGAACGCCCACGA
TGCAATGGCAGACGTTATCGCGACTATCGAGCTGGCTAAGAAAGTGAAAGCCGCCCAACCCAAACTGTTTGATTATTTCT
ACTCGATGCGAACCAAGCGCAAGCTGAATGAACTGATCGACATCGTTAATATGACGCCGCTGATGCATGTTTCCGGCATG
CTGGGACGTGAGTGCCAGTATACCAGTTGGGTCGTCCCCGTTGCCTGGCATCCGACTAACCAGAACGCCGCCATCGTTGT
TGATCTGGCCAAAGATCCACAGCCACTGCTCGACTTAGATGTCGATGCTCTGCACGCCCGTATGTATACACGACACGATG
AACTGGGCCCGGATGAACTGCCGGTACCGGTCAAATTGATTCATCTGAATAAATGTCCGATTCTGGCGCCAGCCAAAACC
CTGACGGCAGAAAATGCCGATCAGATTGGGATTGATCGTCAGCAGTGTCTGGCTAATCTGGCACTGATTCGTCAACATCC
GGAAATCAGGGAAAAACTGATTGGCCTGTTTAATATTGAGCGCGAATTCGATAACAATCACGATGTGGATACCCAGCTTT
ACAATGGTTTCTTCTCACCCACCGACAAAGCGTCGATGGATATCATCCGCTCAACGAACCCTGAGTTTCTGGGAGAGCTG
GGCATCACATTCAGTGACCCGAGAATTGAACCTTTGCTGTTCCGTTACCGTGCCCGCCACTACCCATGGACACTAAACGA
AAGCGAACAGCGTCGCTGGAACGCACATTGCCGGGAGTACTTTGAAACTCATCTGCCCGACTATATGCTGAACCTGGAAA
ACTTAGTTCACGAACATGAGAGTGACAGCAAAAAAATAGCCATATTAAAATCTGTCTATCAATATGTAGAAAAACTAGCC
AGTTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (18-198)

• Exonuclease C-terminal (Exonuc_X-T_C) (217-477)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.992	98.129	0.805