Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG18_RS06310 Genome accession   NZ_CP094165
Coordinates   1338724..1339773 (+) Length   349 a.a.
NCBI ID   WP_245077806.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0011     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333724..1344773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG18_RS06290 (MPG18_06290) - 1333899..1334642 (+) 744 WP_001871592.1 carbonic anhydrase -
  MPG18_RS06295 (MPG18_06295) - 1334791..1335876 (-) 1086 WP_245077800.1 DUF874 family protein -
  MPG18_RS06300 (MPG18_06300) asd 1336307..1337347 (-) 1041 WP_245077802.1 aspartate-semialdehyde dehydrogenase -
  MPG18_RS06305 (MPG18_06305) hisS 1337334..1338662 (-) 1329 WP_245077804.1 histidine--tRNA ligase -
  MPG18_RS06310 (MPG18_06310) waaF 1338724..1339773 (+) 1050 WP_245077806.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG18_RS06315 (MPG18_06315) - 1339966..1340289 (-) 324 WP_228839871.1 flagellar protein -
  MPG18_RS06320 (MPG18_06320) fusA 1340983..1343061 (-) 2079 WP_000101828.1 elongation factor G -
  MPG18_RS06325 (MPG18_06325) rpsG 1343073..1343540 (-) 468 WP_001254366.1 30S ribosomal protein S7 -
  MPG18_RS06330 (MPG18_06330) rpsL 1343556..1343963 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39607.50 Da        Isoelectric Point: 9.6622

>NTDB_id=576803 MPG18_RS06310 WP_245077806.1 1338724..1339773(+) (waaF) [Helicobacter pylori strain Hpfe0011]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKSLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETHPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAVHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576803 MPG18_RS06310 WP_245077806.1 1338724..1339773(+) (waaF) [Helicobacter pylori strain Hpfe0011]
ATGAGCGTAAATGCTCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATCAAAAGTTTATTAAAAAACCCCTTACTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCCCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCACCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGTTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361