Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LEUCM_RS06185 Genome accession   NZ_AP017929
Coordinates   1240473..1241186 (-) Length   237 a.a.
NCBI ID   WP_025016358.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235473..1246186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS06170 (LACBS_01214) - 1236289..1237155 (+) 867 WP_011374902.1 GRP family sugar transporter -
  LEUCM_RS06175 (LACBS_01215) - 1237322..1239868 (+) 2547 WP_016265313.1 YfhO family protein -
  LEUCM_RS06180 (LACBS_01216) - 1239973..1240410 (+) 438 WP_016265312.1 hypothetical protein -
  LEUCM_RS06185 (LACBS_01217) treR 1240473..1241186 (-) 714 WP_025016358.1 trehalose operon repressor Regulator
  LEUCM_RS06190 (LACBS_01218) - 1241359..1242837 (+) 1479 WP_051524301.1 PTS transporter subunit EIIC -
  LEUCM_RS06195 (LACBS_01219) - 1242851..1244500 (+) 1650 WP_025016359.1 alpha,alpha-phosphotrehalase -
  LEUCM_RS06200 (LACBS_01220) - 1244514..1245005 (+) 492 WP_016265308.1 PTS glucose transporter subunit IIA -
  LEUCM_RS06205 (LACBS_01221) - 1245014..1245814 (+) 801 WP_035146179.1 ChbG/HpnK family deacetylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26826.65 Da        Isoelectric Point: 6.5879

>NTDB_id=57680 LEUCM_RS06185 WP_025016358.1 1240473..1241186(-) (treR) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MSKKYEIIYRELVHKITNHVYPANSFLPSENELATAYGTSRETVRKALASLLENGFIHKIKGKGSLVLDFDKYAFPISGL
TSYRELDSLFEMHTQTTVLQLQKATVPQAPFHLDPTEILPATYIQRLRTVDGEPIVIDNDYVLTSVVPEISRVVAQDSLY
HYFEQELGLTIGYGNKEFTVIPATEEQCAILKLAPNSAVVSVKGITHLQDNTLIQFTESIHRADKFKFIEHARRQSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=57680 LEUCM_RS06185 WP_025016358.1 1240473..1241186(-) (treR) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGTCGAAAAAATATGAAATAATCTACCGCGAACTCGTCCATAAAATTACGAACCATGTTTATCCAGCCAACTCATTCTT
ACCCAGCGAAAACGAACTCGCAACAGCGTATGGTACCTCACGCGAAACAGTCCGTAAAGCACTCGCTAGCCTTTTAGAAA
ATGGCTTCATTCATAAGATCAAAGGCAAAGGCTCTTTAGTCCTTGATTTTGATAAATACGCCTTTCCCATTTCCGGCTTG
ACCAGTTACCGCGAATTGGATAGTCTCTTTGAAATGCACACGCAAACAACAGTCCTACAACTCCAAAAAGCAACAGTCCC
ACAAGCGCCTTTTCATTTAGATCCCACAGAGATTCTGCCCGCGACCTATATTCAACGGTTACGGACCGTTGATGGTGAAC
CAATTGTTATCGATAACGACTACGTTCTAACCAGTGTTGTCCCAGAAATCTCACGGGTAGTCGCTCAGGATTCACTTTAT
CACTACTTTGAACAAGAATTGGGTCTAACTATTGGTTATGGGAATAAAGAATTCACTGTTATCCCTGCAACCGAAGAACA
GTGTGCCATCTTAAAACTCGCCCCTAATAGTGCGGTCGTTAGTGTTAAAGGTATCACTCATCTTCAGGATAATACCTTAA
TTCAATTTACCGAATCCATTCACCGGGCTGATAAATTTAAGTTTATTGAACATGCGCGCCGCCAATCAATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(120-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.339

98.312

0.367

Multiple sequence alignment