Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   KQH81_RS10650 Genome accession   NZ_CP076620
Coordinates   2256174..2256878 (+) Length   234 a.a.
NCBI ID   WP_230028232.1    Uniprot ID   -
Organism   Clostridium cadaveris strain IFB3C5     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2251174..2261878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQH81_RS10620 (KQH81_10595) - 2252419..2252805 (-) 387 WP_230028223.1 GntR family transcriptional regulator -
  KQH81_RS10625 (KQH81_10600) - 2252961..2253443 (-) 483 WP_230028225.1 hypothetical protein -
  KQH81_RS10630 (KQH81_10605) - 2253459..2253755 (-) 297 WP_230028226.1 hypothetical protein -
  KQH81_RS10635 (KQH81_10610) - 2253763..2254527 (-) 765 WP_230028228.1 ABC transporter permease -
  KQH81_RS10640 (KQH81_10615) - 2254539..2255264 (-) 726 WP_002844376.1 ABC transporter permease -
  KQH81_RS10645 (KQH81_10620) - 2255261..2256028 (-) 768 WP_230028230.1 ABC transporter ATP-binding protein -
  KQH81_RS10650 (KQH81_10625) scnR 2256174..2256878 (+) 705 WP_230028232.1 response regulator transcription factor Regulator
  KQH81_RS10655 (KQH81_10630) - 2256880..2258277 (+) 1398 WP_230028234.1 sensor histidine kinase KdpD -
  KQH81_RS10660 (KQH81_10635) - 2258449..2258808 (+) 360 WP_230028236.1 helix-turn-helix transcriptional regulator -
  KQH81_RS10665 (KQH81_10640) - 2258819..2260294 (-) 1476 WP_230028238.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26534.60 Da        Isoelectric Point: 4.6872

>NTDB_id=576686 KQH81_RS10650 WP_230028232.1 2256174..2256878(+) (scnR) [Clostridium cadaveris strain IFB3C5]
MNFEYLKDKRLLLVDDEQELLDMVVSILNEEGFNNIATAKTVKEALVLADNFQPEFAILDVMLPDGNGFSLMEQLKQKGE
YPILFLTARGEDEDKFKGFGLGADDYVVKPFLPKELTFRIMAILRRSYKDENPLVKLQNSVIDFDRAEIIKGGEHIALTA
KEHDILAVLYRNAGRIVTIDALCEAAWGENPFGYENSLMAHIRRIREKIEENPSQPVSLITVKGLGYKLIVEGR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=576686 KQH81_RS10650 WP_230028232.1 2256174..2256878(+) (scnR) [Clostridium cadaveris strain IFB3C5]
ATGAATTTTGAATATTTGAAAGATAAACGCCTGTTGCTTGTAGATGACGAGCAGGAGCTTTTGGATATGGTTGTGTCTAT
TCTGAATGAGGAAGGATTTAACAATATTGCCACCGCAAAAACCGTCAAAGAAGCACTTGTCTTAGCAGACAATTTTCAAC
CAGAATTTGCTATCCTTGATGTAATGCTACCGGACGGTAACGGCTTTTCTTTAATGGAACAGTTAAAGCAGAAAGGCGAA
TACCCAATATTATTTTTGACAGCCCGTGGAGAGGACGAGGATAAATTCAAGGGGTTTGGTCTTGGTGCTGATGACTATGT
CGTCAAACCATTTTTACCAAAGGAGCTAACATTCCGTATAATGGCTATTCTACGAAGAAGCTATAAGGACGAAAATCCTC
TTGTAAAATTGCAAAACAGCGTAATTGATTTTGACCGTGCAGAGATAATCAAAGGCGGAGAGCATATCGCTCTAACGGCA
AAAGAGCACGACATTTTGGCTGTTTTATACCGCAATGCAGGTCGGATTGTAACAATAGATGCTCTGTGTGAAGCAGCTTG
GGGCGAAAATCCATTTGGATATGAAAACTCTTTAATGGCACACATACGCCGTATCCGAGAAAAAATAGAGGAAAATCCTT
CACAACCTGTTTCACTGATAACAGTAAAAGGATTGGGATACAAGCTGATTGTGGAGGGCAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-119)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.216

98.718

0.496