Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KP014_RS23750 Genome accession   NZ_CP076607
Coordinates   4879260..4879700 (+) Length   146 a.a.
NCBI ID   WP_036598472.1    Uniprot ID   -
Organism   Paenibacillus sophorae strain DSM 23020     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4874260..4884700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP014_RS23715 (KP014_23715) - 4875550..4876719 (+) 1170 WP_036598466.1 site-specific integrase -
  KP014_RS23720 (KP014_23720) - 4876716..4876910 (+) 195 WP_036598468.1 hypothetical protein -
  KP014_RS28940 - 4877324..4877710 (-) 387 WP_051500323.1 WGxxGxxG family protein -
  KP014_RS23735 (KP014_23735) - 4877836..4877991 (+) 156 WP_175491878.1 hypothetical protein -
  KP014_RS23740 (KP014_23740) - 4878091..4878426 (-) 336 WP_036598469.1 YolD-like family protein -
  KP014_RS23745 (KP014_23745) - 4878600..4879124 (-) 525 WP_036598470.1 hypothetical protein -
  KP014_RS23750 (KP014_23750) nucA/comI 4879260..4879700 (+) 441 WP_036598472.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KP014_RS28945 - 4879747..4879872 (-) 126 WP_139210611.1 sporulation protein YjcZ -
  KP014_RS23755 (KP014_23755) - 4879967..4880431 (-) 465 WP_051500324.1 ferritin-like domain-containing protein -
  KP014_RS23760 (KP014_23760) - 4880596..4880958 (-) 363 WP_036598474.1 YmaF family protein -
  KP014_RS23765 (KP014_23765) - 4881063..4881320 (-) 258 WP_036598475.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  KP014_RS23770 (KP014_23770) - 4881379..4882263 (-) 885 WP_036598477.1 TetR/AcrR family transcriptional regulator -
  KP014_RS23775 (KP014_23775) - 4882417..4883205 (+) 789 WP_051500325.1 DUF1684 domain-containing protein -
  KP014_RS23780 (KP014_23780) - 4883361..4883669 (+) 309 WP_036598480.1 hypothetical protein -
  KP014_RS23785 (KP014_23785) - 4883907..4884359 (-) 453 WP_090834333.1 ASCH domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16506.70 Da        Isoelectric Point: 4.8930

>NTDB_id=576652 KP014_RS23750 WP_036598472.1 4879260..4879700(+) (nucA/comI) [Paenibacillus sophorae strain DSM 23020]
MRKRKHKTYLLVIILLLLVLSYLAEKNGWNFENPPASDSEVVQLIFPSDEYPETAEHIEEAMDKGESKICTIDRGGAEEN
RKESLKGVPTKKRYDRDEWPMAMCKEGGTGADIAYISPADNRGAGSWVGNQLDQYPDGTRIEFIIK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=576652 KP014_RS23750 WP_036598472.1 4879260..4879700(+) (nucA/comI) [Paenibacillus sophorae strain DSM 23020]
GTGCGTAAACGTAAGCATAAGACCTATCTTCTGGTCATCATTCTGCTGCTTCTGGTGCTGTCTTACCTGGCTGAAAAAAA
CGGCTGGAACTTCGAGAATCCTCCTGCTTCCGATTCAGAGGTGGTGCAGTTGATCTTCCCGTCGGACGAATATCCGGAGA
CCGCAGAGCATATTGAGGAGGCCATGGATAAGGGTGAATCCAAAATATGTACGATTGACCGTGGCGGAGCCGAGGAGAAC
CGCAAGGAATCGCTAAAAGGCGTCCCTACCAAAAAGCGCTACGACCGCGATGAATGGCCTATGGCTATGTGCAAAGAAGG
CGGAACGGGGGCGGACATCGCATACATATCACCGGCTGACAACCGTGGTGCGGGCAGTTGGGTTGGCAATCAGCTGGATC
AATACCCGGATGGGACACGGATCGAGTTCATTATTAAATGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

70.548

0.486