Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LEUCM_RS04915 Genome accession   NZ_AP017929
Coordinates   979354..980160 (+) Length   268 a.a.
NCBI ID   WP_025016070.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 974354..985160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS04890 (LACBS_00957) - 975784..976026 (-) 243 WP_025016072.1 hypothetical protein -
  LEUCM_RS04895 (LACBS_00958) - 976113..976583 (-) 471 WP_011375172.1 nucleoside 2-deoxyribosyltransferase -
  LEUCM_RS04900 (LACBS_00959) - 976674..977180 (+) 507 WP_011375171.1 DUF805 domain-containing protein -
  LEUCM_RS04905 (LACBS_00960) rlmD 977396..978787 (-) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  LEUCM_RS04910 (LACBS_00961) - 979173..979352 (+) 180 WP_011375169.1 hypothetical protein -
  LEUCM_RS04915 (LACBS_00962) recX 979354..980160 (+) 807 WP_025016070.1 recombination regulator RecX Regulator
  LEUCM_RS04920 (LACBS_00963) mutY 980147..981250 (+) 1104 WP_056936431.1 A/G-specific adenine glycosylase -
  LEUCM_RS04925 (LACBS_00964) - 981337..981873 (+) 537 WP_011375166.1 DUF402 domain-containing protein -
  LEUCM_RS04930 (LACBS_00965) - 981942..983642 (-) 1701 WP_229295523.1 glycosyltransferase family 8 protein -
  LEUCM_RS04935 (LACBS_00966) - 983784..984203 (-) 420 WP_258421052.1 hypothetical protein -
  LEUCM_RS04940 (LACBS_00967) - 984332..984763 (-) 432 WP_025016066.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31043.96 Da        Isoelectric Point: 6.2613

>NTDB_id=57664 LEUCM_RS04915 WP_025016070.1 979354..980160(+) (recX) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QHLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=57664 LEUCM_RS04915 WP_025016070.1 979354..980160(+) (recX) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGACGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAACACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCAGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCGTTGACGCTATATACAGACGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAACAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
TGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

38.023

98.134

0.373

Multiple sequence alignment