Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG77_RS05250 Genome accession   NZ_CP094159
Coordinates   1105191..1107116 (+) Length   641 a.a.
NCBI ID   WP_245109134.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100191..1112116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG77_RS05225 (MPG77_05225) hofB 1100383..1101822 (-) 1440 WP_245109130.1 outer membrane beta-barrel protein HofB -
  MPG77_RS05230 (MPG77_05230) pyrB 1102118..1103047 (-) 930 WP_245109131.1 aspartate carbamoyltransferase -
  MPG77_RS05235 (MPG77_05235) - 1103114..1103629 (+) 516 WP_000523561.1 hypothetical protein -
  MPG77_RS05240 (MPG77_05240) - 1103629..1104336 (+) 708 WP_245109132.1 TlyA family RNA methyltransferase -
  MPG77_RS05245 (MPG77_05245) - 1104302..1105144 (+) 843 WP_245109133.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG77_RS05250 (MPG77_05250) recP/tkt 1105191..1107116 (+) 1926 WP_245109134.1 transketolase Machinery gene
  MPG77_RS05255 (MPG77_05255) - 1107125..1109461 (+) 2337 WP_245110219.1 PD-(D/E)XK nuclease family protein -
  MPG77_RS05260 (MPG77_05260) - 1109458..1111986 (+) 2529 WP_245109135.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70552.80 Da        Isoelectric Point: 6.7109

>NTDB_id=576629 MPG77_RS05250 WP_245109134.1 1105191..1107116(+) (recP/tkt) [Helicobacter pylori strain Hpfe0020]
MRLSNADLERLKNMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPANPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSTINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKERVLKGAYVKHHSKNPVITLVASGSEVSLALESAKMLERENIPT
QVVSVPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=576629 MPG77_RS05250 WP_245109134.1 1105191..1107116(+) (recP/tkt) [Helicobacter pylori strain Hpfe0020]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAACATGGCCAACACGCTGCGCTTTTTGTGCGCAGATATGATAGA
TAGGGCCAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCGCTAACCCTAAATGGCTTAATAGAGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACTTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATCAATATTAGTTTTAGCGAACAGGTCAAGATGCGGTTTTTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGAGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAATAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGCACCATTAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAAGGCTTTTTGGGGGGAAGTGCGGATTTAGCCCCAT
CTAACAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGTG
AAGACGGAGCCACGCACCAACCCATAGAGCAATTGAGCCATTTGCGCGCTTTGCCCAATTTCTATGCTTTCAGACCTAGC
GATGCTTTTGAAAATACCGCTTGCATGCAGGTAGCGTTAAGTTTGAGCGCTCCTAGTGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCGGGTTTTAAAAGGCGCGTATGTCAAACACCACTCTAAAAACCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGTGCCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAAGGTAAAGT
TTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.86

100

0.415