Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   KMZ14_RS14010 Genome accession   NZ_CP076603
Coordinates   2916289..2916615 (-) Length   108 a.a.
NCBI ID   WP_026056799.1    Uniprot ID   A0AAE7BXZ8
Organism   Acinetobacter schindleri strain MCDA01     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2911289..2921615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS13990 (KMZ14_13935) - 2911486..2912139 (-) 654 WP_163172363.1 FHA domain-containing protein -
  KMZ14_RS13995 (KMZ14_13940) gspD 2912204..2914456 (-) 2253 WP_273798141.1 type II secretion system secretin GspD -
  KMZ14_RS14000 (KMZ14_13945) - 2914495..2915361 (-) 867 WP_273798142.1 type II secretion system protein N -
  KMZ14_RS14005 (KMZ14_13950) gspN 2915361..2916104 (-) 744 WP_273798143.1 type II secretion system protein N -
  KMZ14_RS14010 (KMZ14_13955) hns 2916289..2916615 (-) 327 WP_026056799.1 H-NS family nucleoid-associated regulatory protein Regulator
  KMZ14_RS14015 (KMZ14_13960) - 2916758..2917186 (-) 429 WP_273798144.1 acyl-CoA thioesterase -
  KMZ14_RS14020 (KMZ14_13965) - 2917197..2918390 (-) 1194 WP_273798145.1 heme biosynthesis HemY N-terminal domain-containing protein -
  KMZ14_RS14025 (KMZ14_13970) - 2918397..2919224 (-) 828 WP_273798146.1 hypothetical protein -
  KMZ14_RS14030 (KMZ14_13975) - 2919221..2920000 (-) 780 WP_273798147.1 uroporphyrinogen-III synthase -
  KMZ14_RS14035 (KMZ14_13980) hemC 2920006..2920926 (-) 921 WP_273798148.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12321.07 Da        Isoelectric Point: 5.3249

>NTDB_id=576607 KMZ14_RS14010 WP_026056799.1 2916289..2916615(-) (hns) [Acinetobacter schindleri strain MCDA01]
MMPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKTVEPRYRSKANPE
ETWTGRGKQPRWLVAELEQGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=576607 KMZ14_RS14010 WP_026056799.1 2916289..2916615(-) (hns) [Acinetobacter schindleri strain MCDA01]
GTGATGCCAGACATTACGAATTTATCAGTTGAAGAGTTAAAGCGTTTACAAGCTGAAGCTGAAGCATTAATTGCGTCTAA
AAAAGACCAGGAAATCGAAGATGCTTATAATCAGGTATTAAGCATTGCAGAAAAAGTAGGTATGAGCATTGAGCAGTTGC
TCGAGTTCGGTGCCTCTAAGCGCAAGAAATCATCTCGCAAGACTGTAGAACCACGTTACCGCAGTAAAGCAAATCCGGAA
GAAACCTGGACAGGTCGTGGTAAACAGCCACGCTGGCTGGTTGCAGAACTGGAACAAGGTGCCAAGCTGGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815