Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   KMZ14_RS13690 Genome accession   NZ_CP076603
Coordinates   2840725..2842962 (+) Length   745 a.a.
NCBI ID   WP_273798116.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2835725..2847962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS13670 (KMZ14_13615) lnt 2836444..2838006 (+) 1563 WP_071320704.1 apolipoprotein N-acyltransferase -
  KMZ14_RS13675 (KMZ14_13620) - 2838208..2838543 (-) 336 WP_048881185.1 hypothetical protein -
  KMZ14_RS13680 (KMZ14_13625) gspG 2838828..2839295 (-) 468 WP_227499334.1 type II secretion system major pseudopilin GspG -
  KMZ14_RS13685 (KMZ14_13630) gspF 2839384..2840589 (-) 1206 WP_273798115.1 type II secretion system inner membrane protein GspF -
  KMZ14_RS13690 (KMZ14_13635) priA 2840725..2842962 (+) 2238 WP_273798116.1 primosomal protein N' Machinery gene
  KMZ14_RS13695 (KMZ14_13640) - 2843004..2844857 (+) 1854 WP_273798117.1 cation:proton antiporter -
  KMZ14_RS13700 (KMZ14_13645) hslO 2844908..2845783 (+) 876 WP_004813475.1 Hsp33 family molecular chaperone HslO -
  KMZ14_RS13705 (KMZ14_13650) - 2846245..2846709 (+) 465 WP_163167376.1 DUF2147 domain-containing protein -
  KMZ14_RS13710 (KMZ14_13655) - 2846904..2847365 (+) 462 WP_273798118.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84409.29 Da        Isoelectric Point: 8.4598

>NTDB_id=576606 KMZ14_RS13690 WP_273798116.1 2840725..2842962(+) (priA) [Acinetobacter schindleri strain MCDA01]
MPHLPISDHPASTPSVYRVRVAVPVHLFDCFDYSLSAAQYQQAEVGARVAVSFGRQNLVGVIMEKLPPDTPLDSSFKLKE
ITELLDDRALIDDKVLNLLNWSAQYYQFPIGEVVQSALPTLLRQGKPYNLLARNWKLLDDQAEAKVRRSERQQEAYKILK
LHPVGTTETVLNLAGIETAILKALEKKGICECVLEPQDFSPQPVQLAQMPLTANPEQQHAIQQVLKFKNKYQAFLLDGLT
GSGKTEVYLQIMEKVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSA
IYTPMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDTYALVANGKMQVLELNQRAGTALM
PKIHILDLKVAQKQHGISLHLIQEIRKRLEKKEQVLVFLNRRGYAPVLICDSCGWQAQCPNCDANFTVHRQPYQHLHCHH
CGTLHRMPDHCSSCNHTELKTLGVGTGKVEEQLNELFPDHEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKG
HHFPYVTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTDNYRAFAKQTLEQR
QIARMPPYRYAVMIRCESRDQALNTEFLQKHAAFLRQYQDLQLEIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRA
WWQAMLQDKPSSMKLSLDVDPQELS

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=576606 KMZ14_RS13690 WP_273798116.1 2840725..2842962(+) (priA) [Acinetobacter schindleri strain MCDA01]
ATGCCTCACTTGCCCATCTCAGATCACCCAGCCTCAACTCCTTCAGTTTATCGTGTTCGTGTTGCTGTTCCTGTTCATCT
GTTTGACTGTTTTGATTACAGTTTAAGTGCGGCACAATATCAGCAGGCTGAGGTTGGTGCGCGCGTGGCGGTGTCTTTCG
GCCGGCAGAATCTGGTTGGGGTCATTATGGAAAAGCTGCCGCCAGACACTCCGCTAGATTCCAGTTTTAAACTTAAAGAG
ATTACTGAATTACTGGATGACCGGGCACTCATTGATGACAAGGTACTCAATCTGCTGAACTGGTCAGCGCAGTATTACCA
GTTCCCGATTGGTGAAGTGGTGCAAAGTGCCTTGCCAACTTTATTACGTCAAGGTAAGCCCTATAACCTGCTGGCCCGGA
ACTGGAAACTGTTAGATGACCAAGCAGAAGCCAAGGTACGCCGTTCCGAGCGTCAGCAGGAAGCCTATAAAATTTTAAAA
TTGCATCCAGTCGGTACCACTGAAACTGTACTGAACCTGGCAGGGATCGAGACAGCTATCCTAAAAGCTTTAGAGAAAAA
AGGAATTTGTGAATGTGTGCTGGAACCTCAGGATTTCAGCCCGCAGCCTGTTCAATTGGCACAAATGCCGCTTACAGCCA
ATCCGGAACAGCAGCATGCCATTCAACAGGTACTGAAATTTAAAAATAAATATCAGGCCTTTTTACTGGATGGTCTGACC
GGCAGCGGCAAGACTGAAGTTTATTTGCAGATCATGGAAAAGGTGCTGAAACAGGGAAAACAGGTTTTAGTGCTGGTACC
GGAAATTGGCCTGACGCCACAAACCATTAGCCGGTTCCAGTCACGTTTCCATTGTCATATTGCCTTGTTACATTCTGGTT
TAAATGACTCGAAACGTCTGCAAGCCTGGCAAGCTGCAGAAACCGGTAAAGCCTCGATTGTGCTGGGTACCCGTTCTGCC
ATTTATACCCCGATGCCCAATCTAGGATTGATCATCCTGGATGAGGAACATGATCTGTCCTTTAAACAGCAGGAAGGCTT
CCGTTATCATGCCCGAGATGTTGCGCTTTATCGCGGGCATTTGCAGCAATGTCCGGTGCTTCTGGGCTCTGCCACACCCA
GCATCGATACCTATGCACTGGTTGCCAATGGCAAAATGCAGGTACTGGAACTTAACCAGCGTGCTGGTACAGCCTTAATG
CCAAAGATTCATATTTTAGATTTAAAGGTGGCACAGAAACAGCATGGCATCAGCCTGCATCTGATTCAGGAAATACGCAA
ACGTCTGGAAAAAAAGGAACAGGTACTGGTGTTCCTGAACCGCCGTGGTTATGCACCCGTTTTGATTTGTGACAGCTGTG
GCTGGCAGGCACAGTGTCCAAACTGTGATGCCAATTTCACTGTACACCGTCAGCCATATCAACATTTGCATTGTCACCAT
TGTGGCACCCTGCACCGTATGCCGGATCATTGTTCAAGCTGCAATCATACTGAACTCAAAACACTCGGCGTGGGAACCGG
CAAGGTCGAAGAGCAATTGAATGAACTCTTTCCCGATCATGAAGTCATTCGGGTAGATCGTGACTCTACCAGTCGGGTCG
GTAGCTGGCAGAAAATCTATGACAAGATTCAGAAAAGCGAACCGGCGATTTTGCTCGGTACGCAAATGCTGGCCAAAGGT
CACCATTTCCCCTATGTCACACTGGTCGCTATTTTAGATATTGATTCTGGTCTGCTCAGTGTGGACTTCCGTGCCACCGA
ACGCACTGCCCAACTGATTGTACAGGTGGCTGGTCGTGCCGGTCGTGGCGAGCATAAAGGTGATGTCTATCTACAGACCT
TACGTCCTGATCATGCTTTGCTAAATACCTTGGTGACAGATAATTACCGGGCTTTTGCCAAACAGACCTTAGAGCAGCGT
CAGATTGCCCGCATGCCACCCTATCGCTATGCAGTGATGATCCGTTGCGAATCACGTGATCAGGCATTAAATACAGAGTT
CTTACAGAAACATGCTGCCTTCTTAAGGCAGTATCAGGACCTGCAACTGGAGATCTGGGGACCTATTCCCGCACCAATGG
AACGCAAGGCGGGCCGTTACCAATCACATATGGTACTACTGTCTGCAGACCGTCCACGTTTGCACTATTATGTCAGGGCA
TGGTGGCAAGCCATGTTGCAAGACAAGCCTTCCTCAATGAAGTTAAGCCTGGATGTCGATCCACAAGAACTGAGCTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)

Primosomal protein N C-terminal domain (PriA_C)

(647-741)

Type III restriction enzyme, res subunit (ResIII)

(214-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.867

99.06

0.702