Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG52_RS06405 Genome accession   NZ_CP094157
Coordinates   1373586..1374635 (+) Length   349 a.a.
NCBI ID   WP_245076504.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0021     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368586..1379635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG52_RS06390 (MPG52_06390) - 1369542..1370738 (-) 1197 WP_245076498.1 DUF874 family protein -
  MPG52_RS06395 (MPG52_06395) asd 1371169..1372209 (-) 1041 WP_245076500.1 aspartate-semialdehyde dehydrogenase -
  MPG52_RS06400 (MPG52_06400) hisS 1372196..1373524 (-) 1329 WP_245076502.1 histidine--tRNA ligase -
  MPG52_RS06405 (MPG52_06405) waaF 1373586..1374635 (+) 1050 WP_245076504.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG52_RS06410 (MPG52_06410) - 1374824..1375333 (-) 510 WP_245076506.1 flagellar protein -
  MPG52_RS06415 (MPG52_06415) fusA 1375877..1377955 (-) 2079 WP_040159101.1 elongation factor G -
  MPG52_RS06420 (MPG52_06420) rpsG 1377967..1378434 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG52_RS06425 (MPG52_06425) rpsL 1378450..1378857 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39536.34 Da        Isoelectric Point: 9.5596

>NTDB_id=576602 MPG52_RS06405 WP_245076504.1 1373586..1374635(+) (waaF) [Helicobacter pylori strain Hpfe0021]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFVLVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLTKGLLKNPLLFH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSIVPLEVLQAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576602 MPG52_RS06405 WP_245076504.1 1373586..1374635(+) (waaF) [Helicobacter pylori strain Hpfe0021]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTGTCTTAGTAGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCACTAAAGGCTTATTAAAAAACCCCTTATTATTCCAT
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGACTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCGTGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.209

98.567

0.367