Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   KMZ14_RS06115 Genome accession   NZ_CP076603
Coordinates   1242739..1243374 (+) Length   211 a.a.
NCBI ID   WP_273798828.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237739..1248374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS06080 (KMZ14_06080) kdsB 1237883..1238644 (+) 762 WP_273798825.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KMZ14_RS06085 (KMZ14_06085) - 1238659..1239642 (+) 984 WP_273798826.1 DNA polymerase III subunit delta' -
  KMZ14_RS06090 (KMZ14_06090) - 1239660..1240001 (+) 342 WP_004815576.1 PilZ domain-containing protein -
  KMZ14_RS06095 (KMZ14_06095) - 1240029..1240802 (+) 774 WP_004815579.1 TatD family hydrolase -
  KMZ14_RS06100 (KMZ14_06100) - 1240843..1241457 (+) 615 WP_071320090.1 TetR/AcrR family transcriptional regulator -
  KMZ14_RS06105 (KMZ14_06105) - 1241467..1242024 (+) 558 WP_273798827.1 type II secretion system protein -
  KMZ14_RS06110 (KMZ14_06110) gspI 1242194..1242742 (+) 549 WP_273799050.1 type II secretion system minor pseudopilin GspI -
  KMZ14_RS06115 (KMZ14_06115) xcpW 1242739..1243374 (+) 636 WP_273798828.1 type II secretion system protein GspJ Machinery gene
  KMZ14_RS06120 (KMZ14_06120) gspK 1243384..1244331 (+) 948 WP_273798829.1 type II secretion system minor pseudopilin GspK -
  KMZ14_RS06125 (KMZ14_06125) - 1244479..1245075 (+) 597 WP_048881306.1 6-pyruvoyl trahydropterin synthase family protein -
  KMZ14_RS06130 (KMZ14_06130) ung 1245121..1245837 (+) 717 WP_273798830.1 uracil-DNA glycosylase -
  KMZ14_RS06135 (KMZ14_06135) - 1245834..1246958 (+) 1125 WP_248603644.1 enoyl-CoA hydratase/isomerase family protein -
  KMZ14_RS06140 (KMZ14_06140) tadA 1246962..1247483 (+) 522 WP_273798831.1 tRNA adenosine(34) deaminase TadA -
  KMZ14_RS06145 (KMZ14_06145) - 1247535..1247966 (+) 432 WP_273798832.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24074.22 Da        Isoelectric Point: 4.8547

>NTDB_id=576591 KMZ14_RS06115 WP_273798828.1 1242739..1243374(+) (xcpW) [Acinetobacter schindleri strain MCDA01]
MKKNGFTLVELLVAIAIFAVLSALGWQVFDHIRVTRDQNTLHEQKLNQLQQGYQQILRDMVQTVPLTANVNGDIQPALVL
QDGRFNFSKTGVTDPLEQGIAPDERVEYQYRADEQKVYRLKFKNLNQTGRDQPESSILLSDVEQFQITALNPNEITQWPE
IGLDLNRTENKQLLPKGIKINLTVQGVQYEWLFSLLNTDYLSNNTNNIGSS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=576591 KMZ14_RS06115 WP_273798828.1 1242739..1243374(+) (xcpW) [Acinetobacter schindleri strain MCDA01]
ATGAAAAAAAATGGATTTACCCTGGTTGAGCTGCTGGTTGCGATTGCGATCTTTGCTGTATTGTCTGCATTGGGATGGCA
GGTCTTTGATCATATCCGGGTCACGCGCGATCAAAATACCCTTCATGAACAAAAGCTAAATCAATTACAGCAGGGCTATC
AGCAGATTCTGCGTGATATGGTGCAAACAGTACCCTTAACTGCAAATGTAAATGGTGATATTCAGCCAGCTTTAGTATTG
CAAGATGGTCGTTTTAATTTTAGTAAGACTGGTGTTACGGATCCGTTGGAACAAGGCATTGCGCCGGATGAGCGGGTGGA
ATATCAATATCGGGCGGATGAGCAAAAAGTCTATCGGCTTAAATTCAAGAACTTGAACCAGACCGGACGCGATCAACCGG
AGTCGAGTATATTGCTGAGTGATGTAGAACAGTTTCAAATTACTGCGCTGAATCCAAATGAAATCACGCAATGGCCGGAA
ATTGGACTGGATTTAAATCGTACTGAAAACAAGCAGCTTTTACCGAAAGGCATCAAGATCAATCTGACTGTACAGGGTGT
GCAATATGAATGGTTATTCAGTCTGCTGAACACAGATTATCTGTCCAATAATACCAATAATATAGGCAGCTCATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(58-192)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

57.216

91.943

0.526