Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG52_RS03015 Genome accession   NZ_CP094157
Coordinates   640967..641233 (-) Length   88 a.a.
NCBI ID   WP_064431320.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0021     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 635967..646233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG52_RS03005 (MPG52_03005) - 636515..638548 (-) 2034 Protein_593 type IA DNA topoisomerase -
  MPG52_RS03010 (MPG52_03010) comB4 638551..640920 (-) 2370 WP_342371208.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG52_RS03015 (MPG52_03015) comB3 640967..641233 (-) 267 WP_064431320.1 hypothetical protein Machinery gene
  MPG52_RS03020 (MPG52_03020) - 641234..641536 (-) 303 WP_108538717.1 virB2 type IV secretion protein -
  MPG52_RS03025 (MPG52_03025) - 641533..643056 (-) 1524 WP_245077152.1 hypothetical protein -
  MPG52_RS03030 (MPG52_03030) - 643063..643356 (-) 294 WP_025276172.1 hypothetical protein -
  MPG52_RS03035 (MPG52_03035) - 643376..644051 (-) 676 Protein_599 hypothetical protein -
  MPG52_RS03040 (MPG52_03040) - 644045..644584 (+) 540 Protein_600 DNA adenine methylase -
  MPG52_RS03045 (MPG52_03045) - 644586..645210 (+) 625 Protein_601 GIY-YIG nuclease family protein -
  MPG52_RS03050 (MPG52_03050) - 645307..645789 (+) 483 Protein_602 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10191.03 Da        Isoelectric Point: 4.8782

>NTDB_id=576591 MPG52_RS03015 WP_064431320.1 640967..641233(-) (comB3) [Helicobacter pylori strain Hpfe0021]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHVLFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=576591 MPG52_RS03015 WP_064431320.1 640967..641233(-) (comB3) [Helicobacter pylori strain Hpfe0021]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTGTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGTGCTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386