Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   KMZ14_RS02275 Genome accession   NZ_CP076603
Coordinates   455789..456652 (+) Length   287 a.a.
NCBI ID   WP_213064673.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450789..461652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS02250 (KMZ14_02250) - 451078..452280 (+) 1203 WP_273798457.1 CsgG/HfaB family protein -
  KMZ14_RS02255 (KMZ14_02255) - 452363..453040 (+) 678 WP_004809734.1 hypothetical protein -
  KMZ14_RS02260 (KMZ14_02260) - 453301..453876 (-) 576 WP_004809732.1 xanthine phosphoribosyltransferase -
  KMZ14_RS02265 (KMZ14_02265) - 453967..454680 (-) 714 WP_004809730.1 DUF3108 domain-containing protein -
  KMZ14_RS02270 (KMZ14_02270) - 454832..455521 (-) 690 WP_273798458.1 hypothetical protein -
  KMZ14_RS02275 (KMZ14_02275) tonB2 455789..456652 (+) 864 WP_213064673.1 energy transducer TonB Machinery gene
  KMZ14_RS02280 (KMZ14_02280) - 456649..456948 (-) 300 WP_004896079.1 antibiotic biosynthesis monooxygenase family protein -
  KMZ14_RS02285 (KMZ14_02285) - 456980..457378 (-) 399 WP_111810313.1 hypothetical protein -
  KMZ14_RS02290 (KMZ14_02290) ybeY 457522..458004 (-) 483 WP_273798459.1 rRNA maturation RNase YbeY -
  KMZ14_RS02295 (KMZ14_02295) - 458027..459103 (-) 1077 WP_048881843.1 PhoH family protein -
  KMZ14_RS02300 (KMZ14_02300) miaB 459143..460600 (-) 1458 WP_273798460.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32774.37 Da        Isoelectric Point: 9.5613

>NTDB_id=576587 KMZ14_RS02275 WP_213064673.1 455789..456652(+) (tonB2) [Acinetobacter schindleri strain MCDA01]
MPLVKSWWKDPIFSSAVGIAALLHIMILMLQFGMPSEQDTSTKEIAVSLRVSNDKIEHADFLAQTDQQGSGQFREAHRMS
SDAPLPMPDQTAGKEAMLQNSQDMLQQKQELSFEEKVLMTTLSWQKQAEENQRKKRQEELNSQFQAKAAMVASLEAQYTQ
RQKNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPESARIQRLAGDVRLMVILNQNGGIRAIRLLESSGHT
VLDEAARTSLRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=576587 KMZ14_RS02275 WP_213064673.1 455789..456652(+) (tonB2) [Acinetobacter schindleri strain MCDA01]
ATGCCTTTGGTTAAATCATGGTGGAAAGATCCAATTTTTAGCAGTGCTGTAGGGATTGCTGCATTATTACATATCATGAT
TTTAATGCTGCAGTTTGGAATGCCATCGGAACAGGATACTTCGACCAAGGAAATTGCAGTTAGCCTGCGCGTCAGTAATG
ACAAAATCGAGCATGCCGATTTTCTTGCCCAGACAGATCAGCAAGGTTCCGGTCAGTTCCGTGAAGCGCATCGTATGTCC
AGTGATGCTCCATTGCCGATGCCGGATCAGACAGCTGGAAAAGAGGCAATGCTTCAAAACAGCCAAGATATGCTGCAACA
AAAACAAGAGTTGAGCTTTGAAGAAAAAGTTCTGATGACAACCCTAAGCTGGCAGAAACAGGCAGAAGAAAATCAGCGCA
AGAAACGTCAGGAAGAACTCAACAGCCAGTTTCAAGCCAAAGCTGCTATGGTCGCGAGTCTGGAAGCTCAATATACGCAG
CGCCAGAAAAACTTTAGCCGTCAGCAGAAAATTAAAACTGTTGACGGTATCCAAGCCAAGCAGGATGTATCTGCAGCTTA
TCTGGAAAAATTCCGTCAAAAAGTCGAATTTTATGGGAATCGTTTTTATCCTGAATCTGCCCGTATACAGCGCTTGGCGG
GTGACGTCCGCTTAATGGTGATTCTGAATCAAAATGGGGGTATTCGAGCGATTCGATTGTTGGAATCTTCTGGTCATACT
GTATTGGATGAAGCTGCTCGAACCTCATTACGTAAGGCTGCGCCGTTTGGTGCTTTCGATGCCAAAATGAAAGATATTTC
AGAATTACGAATTATCCGAACCTGGCGTTTTGATCCGGCAGAAGCCGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(201-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.429

97.561

0.697