Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG52_RS02470 Genome accession   NZ_CP094157
Coordinates   529758..531683 (-) Length   641 a.a.
NCBI ID   WP_245077063.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 524758..536683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG52_RS02460 (MPG52_02460) - 524870..527428 (-) 2559 WP_245077059.1 DNA translocase FtsK -
  MPG52_RS02465 (MPG52_02465) addB 527425..529761 (-) 2337 WP_245077061.1 ATP-dependent deoxyribonuclease AddB -
  MPG52_RS02470 (MPG52_02470) recP/tkt 529758..531683 (-) 1926 WP_245077063.1 transketolase Machinery gene
  MPG52_RS02475 (MPG52_02475) - 531730..532572 (-) 843 WP_245077065.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG52_RS02480 (MPG52_02480) - 532538..533245 (-) 708 WP_180451143.1 TlyA family RNA methyltransferase -
  MPG52_RS02485 (MPG52_02485) - 533245..533760 (-) 516 WP_000523549.1 hypothetical protein -
  MPG52_RS02490 (MPG52_02490) pyrB 533827..534750 (+) 924 WP_180451141.1 aspartate carbamoyltransferase -
  MPG52_RS02495 (MPG52_02495) hofB 535004..536443 (+) 1440 WP_245077067.1 outer membrane beta-barrel protein HofB -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70825.06 Da        Isoelectric Point: 6.6215

>NTDB_id=576586 MPG52_RS02470 WP_245077063.1 529758..531683(-) (recP/tkt) [Helicobacter pylori strain Hpfe0021]
MRLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNINPINPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKHFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEVISHKVYCLCGDGD
LQEGISYESASLAGHFRLDNLIVIYDSNQISIEGAINISFSEQIKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSHKPT
LLIAHTIIGKGAVGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGASLEALWEKSLSPKIKE
KIHALKNFDFNTIHYPTFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTHLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSMRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLNAPSTLILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAQILERENIQT
QVISTPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=576586 MPG52_RS02470 WP_245077063.1 529758..531683(-) (recP/tkt) [Helicobacter pylori strain Hpfe0021]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCGAACACGCTTCGTTTTTTATGTGCAGACATGATAGA
TAAGGCTAATAGTGGGCATCCGGGCGTGTGCTTGGGGTTAGCTGATGTGATGGTGGTTTTAAGCTTGCACCTTAATATAA
ACCCCATTAACCCTAAATGGCTCAACAGGGATAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTAGAAGATTTAAAGCATTTCAGGCAATTACACTCTAAAACCCCAGGACATCC
CGAATTGCACCACACCGAAGGCATTGAGATCACCACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTGGATAAAGAAGTGATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGCTATGAGAGCGCTTCTTTAGCCGGGCACTTTCGCCTTGATAACCTCATTGTGATTTATGATAG
TAATCAGATCAGTATTGAAGGTGCTATTAATATTAGTTTTAGCGAACAGATTAAAATGCGTTTTTTAGCACAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCCATAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTGTTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGTGCTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAATAAAAGAA
AAAATCCATGCGTTAAAGAATTTTGATTTTAACACCATCCATTACCCCACCTTTAAAAAAGGCGAATCTCTAGCCACAAG
AGTGAGTAATGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCCT
CTAATAACACGCATTTAAAACACTCTGGCGATTTCCCTTTGGGGCAAAACCTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCCAGCATGCGTTTGAGCGCTTTAATGAAATTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGATGGGGCGACGCACCAGCCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCTAATTTTTATGCTTTCAGACCTAGC
GATGCTTTTGAAAATACGGCTTGCATGCAAGTAGCGTTAAGTTTGAACGCTCCTAGCACTCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTAGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACACCACTCTAAAGATCCCATTA
TCACGCTCGTTGCGAGCGGGAGCGAAGTCTCTTTGGCTTTAGAGAGCGCTCAAATTTTAGAGCGAGAAAATATCCAAACG
CAAGTCATCAGCACACCTTGCTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTCTTTAAGGGTAAGGT
TTTAGTGATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAACATCACCGCTCAAGCTAAAAGGTTGCTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.707

100

0.413