Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG67_RS01530 Genome accession   NZ_CP094156
Coordinates   296524..297573 (-) Length   349 a.a.
NCBI ID   WP_245072957.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe005     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 291524..302573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG67_RS01510 (MPG67_01510) rpsL 292245..292652 (+) 408 WP_001142325.1 30S ribosomal protein S12 -
  MPG67_RS01515 (MPG67_01515) rpsG 292668..293135 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG67_RS01520 (MPG67_01520) fusA 293147..295225 (+) 2079 WP_245072956.1 elongation factor G -
  MPG67_RS01525 (MPG67_01525) - 295949..296329 (+) 381 WP_000744161.1 hypothetical protein -
  MPG67_RS01530 (MPG67_01530) waaF 296524..297573 (-) 1050 WP_245072957.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG67_RS01535 (MPG67_01535) hisS 297635..298963 (+) 1329 WP_245072958.1 histidine--tRNA ligase -
  MPG67_RS01540 (MPG67_01540) asd 298950..299990 (+) 1041 WP_245072959.1 aspartate-semialdehyde dehydrogenase -
  MPG67_RS01545 (MPG67_01545) - 300421..301431 (+) 1011 Protein_300 DUF874 family protein -
  MPG67_RS01550 (MPG67_01550) - 301662..302405 (-) 744 WP_245072960.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39599.51 Da        Isoelectric Point: 9.5783

>NTDB_id=576530 MPG67_RS01530 WP_245072957.1 296524..297573(-) (waaF) [Helicobacter pylori strain Hpfe005]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIECIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576530 MPG67_RS01530 WP_245072957.1 296524..297573(-) (waaF) [Helicobacter pylori strain Hpfe005]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCACATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATAATTTCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATCTTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCCAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364