Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LEUCM_RS02405 Genome accession   NZ_AP017929
Coordinates   487158..487964 (-) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 482158..492964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS02385 (LACBS_00468) add 482860..483885 (+) 1026 WP_025016469.1 adenosine deaminase -
  LEUCM_RS02390 (LACBS_00469) - 483942..484601 (-) 660 WP_025016470.1 hypothetical protein -
  LEUCM_RS02395 (LACBS_00470) rlmH 484741..485220 (-) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LEUCM_RS02400 (LACBS_00471) htrA 485765..487024 (-) 1260 WP_025016471.1 S1C family serine protease Regulator
  LEUCM_RS02405 (LACBS_00472) vicX 487158..487964 (-) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  LEUCM_RS02410 (LACBS_00473) - 487999..488403 (-) 405 Protein_453 two-component system regulatory protein YycI -
  LEUCM_RS02425 (LACBS_00476) yycH 489570..490586 (-) 1017 WP_056936473.1 two-component system activity regulator YycH -
  LEUCM_RS02430 (LACBS_00477) walK 490576..492474 (-) 1899 WP_025016486.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=57652 LEUCM_RS02405 WP_016264363.1 487158..487964(-) (vicX) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=57652 LEUCM_RS02405 WP_016264363.1 487158..487964(-) (vicX) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575

Multiple sequence alignment