Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPF98_RS05450 Genome accession   NZ_CP094153
Coordinates   1137561..1139486 (+) Length   641 a.a.
NCBI ID   WP_245048865.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132561..1144486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS05425 (MPF98_05425) hofB 1132761..1134200 (-) 1440 WP_245048852.1 outer membrane beta-barrel protein HofB -
  MPF98_RS05430 (MPF98_05430) pyrB 1134494..1135417 (-) 924 WP_245048861.1 aspartate carbamoyltransferase -
  MPF98_RS05435 (MPF98_05435) - 1135484..1135999 (+) 516 WP_000523557.1 hypothetical protein -
  MPF98_RS05440 (MPF98_05440) - 1135999..1136706 (+) 708 WP_245048863.1 TlyA family RNA methyltransferase -
  MPF98_RS05445 (MPF98_05445) - 1136672..1137514 (+) 843 WP_000931625.1 bifunctional riboflavin kinase/FAD synthetase -
  MPF98_RS05450 (MPF98_05450) recP/tkt 1137561..1139486 (+) 1926 WP_245048865.1 transketolase Machinery gene
  MPF98_RS05455 (MPF98_05455) - 1139483..1141819 (+) 2337 WP_245048867.1 PD-(D/E)XK nuclease family protein -
  MPF98_RS05460 (MPF98_05460) - 1141816..1144371 (+) 2556 WP_245048869.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70460.67 Da        Isoelectric Point: 6.5044

>NTDB_id=576506 MPF98_RS05450 WP_245048865.1 1137561..1139486(+) (recP/tkt) [Helicobacter pylori strain Hpfe010]
MQLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENVQINPDESFIISPKNKMHFEEMKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQAALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYNAKNPAITLVASGSEVSLALESAKMLERENIPT
QVVSVPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=576506 MPF98_RS05450 WP_245048865.1 1137561..1139486(+) (recP/tkt) [Helicobacter pylori strain Hpfe010]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTTCGCTTTTTGTGTGCGGACATGATAGA
TAGGGCCAATAGCGGGCATCCGGGCGTTTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGGGACAGACTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTGAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAGGTCAAGATGCGGTTTTTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGAGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAATGTTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAATGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCACGCGTTGAAGGATTTTGATTTTAGTGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTTTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAAGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCGT
CTAACAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGTGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGTGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGATAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAACCCATAGAGCAATTGAGCCATTTGCGCGCCTTGCCCAACTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGCAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGTGCGTATGTTAAATATAATGCTAAAAACCCCGCTA
TCACGCTGGTTGCGAGTGGGAGCGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGTGCCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
CTTAGTCATTGAAGCGAGTCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.86

100

0.415