Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPF98_RS01525 Genome accession   NZ_CP094153
Coordinates   294367..295416 (-) Length   349 a.a.
NCBI ID   WP_245049569.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 289367..300416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS01500 (MPF98_01500) rpsL 289957..290364 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPF98_RS01505 (MPF98_01505) rpsG 290380..290847 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPF98_RS01510 (MPF98_01510) fusA 290859..292937 (+) 2079 WP_000101843.1 elongation factor G -
  MPF98_RS01515 (MPF98_01515) - 293474..293845 (+) 372 Protein_289 flagellar protein -
  MPF98_RS01520 (MPF98_01520) - 293855..294178 (+) 324 WP_228839871.1 flagellar protein -
  MPF98_RS01525 (MPF98_01525) waaF 294367..295416 (-) 1050 WP_245049569.1 lipopolysaccharide heptosyltransferase II Regulator
  MPF98_RS01530 (MPF98_01530) hisS 295478..296806 (+) 1329 WP_245049570.1 histidine--tRNA ligase -
  MPF98_RS01535 (MPF98_01535) asd 296793..297833 (+) 1041 WP_245049572.1 aspartate-semialdehyde dehydrogenase -
  MPF98_RS01540 (MPF98_01540) - 298264..299394 (+) 1131 WP_245049574.1 DUF874 family protein -
  MPF98_RS01545 (MPF98_01545) - 299536..300279 (-) 744 WP_014536785.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39644.62 Da        Isoelectric Point: 9.7383

>NTDB_id=576488 MPF98_RS01525 WP_245049569.1 294367..295416(-) (waaF) [Helicobacter pylori strain Hpfe010]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNMHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIATLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576488 MPF98_RS01525 WP_245049569.1 294367..295416(-) (waaF) [Helicobacter pylori strain Hpfe010]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACTCTTAAACACCACTACCCTAACATGCATTTTATCTTAGTAGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCATACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGTTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTACTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAGCGATCGTGTTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364