Detailed information NTG0576478

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG81_RS07675
• Genome accession: NZ_CP094151
• Coordinates: 1604996..1606195 (+)
• Length: 399 a.a.
• NCBI ID: WP_245087020.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe019
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1599996..1611195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG81_RS07660 (MPG81_07660)	-	1602037..1602171 (+)	135	WP_245087016.1	type IV secretion system protein VirB7	-
MPG81_RS07665 (MPG81_07665)	-	1602164..1603327 (+)	1164	WP_245087018.1	VirB8/TrbF family protein	-
MPG81_RS07670 (MPG81_07670)	-	1603330..1604999 (+)	1670	Protein_1499	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG81_RS07675 (MPG81_07675)	comB10	1604996..1606195 (+)	1200	WP_245087020.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG81_RS07680 (MPG81_07680)	-	1606179..1608389 (+)	2211	WP_245087022.1	collagen-like protein	-
MPG81_RS07685 (MPG81_07685)	-	1608402..1609379 (+)	978	WP_245087024.1	hypothetical protein	-
MPG81_RS07690 (MPG81_07690)	-	1609397..1609669 (+)	273	WP_245087026.1	hypothetical protein	-
MPG81_RS07695 (MPG81_07695)	-	1609674..1610618 (+)	945	WP_245087028.1	CpaF/VirB11 family protein	-
MPG81_RS07700 (MPG81_07700)	-	1610615..1611133 (+)	519	WP_033588775.1	hypothetical protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44519.15 Da
• Isoelectric Point: 9.8947

>NTDB_id=576478 MPG81_RS07675 WP_245087020.1 1604996..1606195(+) (comB10) [Helicobacter pylori strain Hpfe019]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQALQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNDQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGDGNPFFGDYLL
LQLARNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=576478 MPG81_RS07675 WP_245087020.1 1604996..1606195(+) (comB10) [Helicobacter pylori strain Hpfe019]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGCTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACGATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
TTGCAACTCGCTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.181	98.496	0.524