Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG81_RS07015 Genome accession   NZ_CP094151
Coordinates   1472836..1474149 (-) Length   437 a.a.
NCBI ID   WP_245086896.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1467836..1479149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS06985 (MPG81_06985) nadC 1468299..1469120 (-) 822 WP_245086892.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG81_RS06990 (MPG81_06990) nadA 1469120..1470130 (-) 1011 WP_060869838.1 quinolinate synthase NadA -
  MPG81_RS06995 (MPG81_06995) - 1470120..1470923 (-) 804 WP_245086894.1 phosphatidylserine decarboxylase -
  MPG81_RS07000 (MPG81_07000) - 1470920..1471423 (-) 504 WP_000953085.1 hypothetical protein -
  MPG81_RS07005 (MPG81_07005) - 1471436..1471930 (-) 495 WP_014537179.1 hypothetical protein -
  MPG81_RS07010 (MPG81_07010) mqnP 1471923..1472807 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG81_RS07015 (MPG81_07015) comEC/comE3 1472836..1474149 (-) 1314 WP_245086896.1 ComEC/Rec2 family competence protein Machinery gene
  MPG81_RS07020 (MPG81_07020) - 1474146..1475606 (-) 1461 WP_245086898.1 replicative DNA helicase -
  MPG81_RS07025 (MPG81_07025) - 1475617..1477011 (-) 1395 WP_245086900.1 NAD(P)H-hydrate dehydratase -
  MPG81_RS07030 (MPG81_07030) crdS 1477014..1478216 (-) 1203 WP_245088396.1 copper-sensing histidine kinase CrdS -
  MPG81_RS07035 (MPG81_07035) crdR 1478182..1478823 (-) 642 WP_001169808.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50172.18 Da        Isoelectric Point: 9.8315

>NTDB_id=576470 MPG81_RS07015 WP_245086896.1 1472836..1474149(-) (comEC/comE3) [Helicobacter pylori strain Hpfe019]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKISSFLVRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFGIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=576470 MPG81_RS07015 WP_245086896.1 1472836..1474149(-) (comEC/comE3) [Helicobacter pylori strain Hpfe019]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTACTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAATCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTGGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95