Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG81_RS01530 Genome accession   NZ_CP094151
Coordinates   302400..303449 (-) Length   349 a.a.
NCBI ID   WP_245087476.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 297400..308449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS01510 (MPG81_01510) rpsL 298494..298886 (+) 393 WP_001142324.1 30S ribosomal protein S12 -
  MPG81_RS01515 (MPG81_01515) rpsG 298902..299369 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG81_RS01520 (MPG81_01520) fusA 299381..301459 (+) 2079 WP_245087473.1 elongation factor G -
  MPG81_RS01525 (MPG81_01525) - 301992..302210 (+) 219 WP_000744170.1 hypothetical protein -
  MPG81_RS01530 (MPG81_01530) waaF 302400..303449 (-) 1050 WP_245087476.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG81_RS01535 (MPG81_01535) hisS 303511..304839 (+) 1329 WP_245087479.1 histidine--tRNA ligase -
  MPG81_RS01540 (MPG81_01540) asd 304826..305866 (+) 1041 WP_245087482.1 aspartate-semialdehyde dehydrogenase -
  MPG81_RS01545 (MPG81_01545) - 306299..307354 (+) 1056 Protein_298 DUF874 family protein -
  MPG81_RS01550 (MPG81_01550) - 307590..308333 (-) 744 WP_245087486.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39540.30 Da        Isoelectric Point: 9.4739

>NTDB_id=576443 MPG81_RS01530 WP_245087476.1 302400..303449(-) (waaF) [Helicobacter pylori strain Hpfe019]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPVSYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCTKTSIEELIERIAILDLFITNDSGPMHAAVSTQTPLIALFGPTDEKETSPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576443 MPG81_RS01530 WP_245087476.1 302400..303449(-) (waaF) [Helicobacter pylori strain Hpfe019]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGTTTCTTATTATGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCACGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGTGGCCCTATGCATGCGGCTGTTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.209

98.567

0.367