Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KP626_RS08415 Genome accession   NZ_CP076563
Coordinates   1656055..1657452 (+) Length   465 a.a.
NCBI ID   WP_395976674.1    Uniprot ID   A0A8F2JBT1
Organism   Christensenella sp. MSJ-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1651055..1662452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP626_RS08390 (KP626_08360) mazG 1652216..1653652 (+) 1437 WP_395976664.1 nucleoside triphosphate pyrophosphohydrolase -
  KP626_RS08395 (KP626_08365) - 1653784..1654056 (+) 273 WP_395976666.1 HU family DNA-binding protein -
  KP626_RS08400 (KP626_08370) - 1654177..1654419 (+) 243 WP_395976668.1 RNA-binding S4 domain-containing protein -
  KP626_RS08405 (KP626_08375) ispF 1654430..1654915 (+) 486 WP_395976670.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KP626_RS08410 (KP626_08380) - 1654902..1656050 (+) 1149 WP_395976672.1 hypothetical protein -
  KP626_RS08415 (KP626_08385) radA 1656055..1657452 (+) 1398 WP_395976674.1 DNA repair protein RadA Machinery gene
  KP626_RS08420 (KP626_08390) - 1657575..1658666 (+) 1092 WP_395979001.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 49699.52 Da        Isoelectric Point: 6.9193

>NTDB_id=576420 KP626_RS08415 WP_395976674.1 1656055..1657452(+) (radA) [Christensenella sp. MSJ-20]
MAKAKTVFVCTECGYESGKWMGRCSGCGSWNTMVEQQAAAPAAPDRRGASMGRVPAAPVHIKDVTGEKVPHIPTGIAELD
RVLGGGYIEGGVLLLGGEPGVGKSTLLLQACDSLSLSGKRVLYVSGEESVRQVSLRARRLGVAGEELFVLAETLVSAIRD
SIEKIGPQVVVIDSIQTIYLDTITSAPGSVAQVRESAAYLMSLAKETGFYLIFVGHVTKEGAIAGPRVLEHMVDTVLYFE
GERQSTLRVLRAVKNRFGSTNEIGIFEMQAGGMVAVEDASAYMLSSMTRGVAGVSVTCSVEGSRPMMCEVQALVTDTSYG
NPRRMCQGVEFNRMVLMIAVLERRAGISLASRDVYMNAVGGMRMAEPSGDLAVIAALASAALDMPLLEDTVFIGEVGLSG
EIRHVSQMERRIQECARLGFSTVVLPPTRGVKKEDFPQIRLLFAKDVSAALAATLRKGRKDGEQI

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=576420 KP626_RS08415 WP_395976674.1 1656055..1657452(+) (radA) [Christensenella sp. MSJ-20]
ATGGCGAAAGCAAAAACGGTATTTGTATGCACGGAATGCGGATATGAGTCGGGGAAGTGGATGGGCCGGTGCAGCGGCTG
CGGCTCCTGGAACACCATGGTGGAGCAGCAGGCTGCGGCTCCCGCCGCCCCCGACCGCCGGGGCGCCTCCATGGGGAGAG
TGCCCGCCGCCCCCGTCCACATCAAGGACGTGACGGGGGAAAAGGTGCCCCATATCCCCACCGGGATCGCGGAATTGGAT
CGGGTGTTGGGGGGCGGATACATTGAGGGAGGCGTCCTGCTGCTGGGAGGCGAGCCCGGCGTGGGGAAGTCCACCCTCTT
GCTGCAGGCCTGTGACAGCCTGTCCCTTTCGGGGAAACGGGTGCTGTATGTATCGGGGGAGGAATCCGTCCGCCAGGTGA
GCCTTCGGGCCCGCCGTCTGGGGGTGGCGGGGGAGGAGCTATTTGTGTTGGCCGAAACCCTGGTGTCCGCCATCCGGGAC
AGCATCGAGAAGATTGGGCCCCAGGTGGTGGTCATTGACTCCATTCAAACCATTTATCTGGACACCATCACCTCGGCGCC
GGGCAGCGTGGCCCAGGTGCGGGAGAGCGCCGCCTACCTCATGAGTTTGGCCAAGGAGACGGGGTTCTATCTCATCTTTG
TGGGACACGTTACTAAGGAAGGGGCCATCGCGGGGCCCCGGGTGCTGGAGCATATGGTGGATACGGTGCTGTACTTTGAA
GGGGAGCGGCAGAGTACCCTTCGGGTGCTGCGGGCGGTGAAGAACCGCTTTGGCTCCACCAACGAGATTGGGATCTTTGA
GATGCAGGCCGGCGGCATGGTGGCGGTGGAGGACGCCTCCGCCTACATGCTTTCCTCCATGACCCGGGGGGTAGCGGGGG
TATCGGTGACCTGCAGCGTGGAGGGCTCCCGCCCCATGATGTGCGAGGTGCAGGCTCTGGTTACCGACACCAGCTACGGC
AATCCCCGGCGGATGTGCCAGGGGGTGGAGTTTAACCGCATGGTGCTGATGATCGCCGTGCTGGAGCGGCGGGCGGGAAT
CTCCCTTGCCAGCAGGGACGTCTATATGAACGCTGTAGGCGGCATGCGGATGGCGGAGCCCTCGGGGGATCTGGCGGTGA
TTGCAGCCCTTGCGTCCGCAGCCCTGGACATGCCTCTATTGGAGGATACGGTGTTCATCGGGGAGGTGGGCCTATCGGGG
GAGATCCGCCATGTGAGCCAGATGGAACGCCGAATCCAGGAGTGCGCCCGGCTGGGATTTTCCACCGTGGTGCTGCCCCC
TACCCGGGGCGTCAAAAAGGAGGATTTTCCCCAGATCCGACTGCTCTTTGCAAAGGACGTTTCCGCTGCCCTTGCGGCCA
CGCTGCGAAAGGGACGGAAGGATGGAGAACAGATATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(367-427)

AAA domain (AAA_25)

(71-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.147

92.258

0.49
  radA Streptococcus mitis NCTC 12261

51.174

91.613

0.469
  radA Streptococcus pneumoniae Rx1

51.174

91.613

0.469
  radA Streptococcus pneumoniae D39

51.174

91.613

0.469
  radA Streptococcus pneumoniae R6

51.174

91.613

0.469
  radA Streptococcus pneumoniae TIGR4

51.174

91.613

0.469
  radA Streptococcus mitis SK321

51.174

91.613

0.469