Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KP626_RS00855 Genome accession   NZ_CP076563
Coordinates   185905..187761 (+) Length   618 a.a.
NCBI ID   WP_395977424.1    Uniprot ID   A0A8F2JBX3
Organism   Christensenella sp. MSJ-20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 180905..192761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP626_RS00830 (KP626_00830) trxA 181182..181487 (-) 306 WP_395977414.1 thioredoxin -
  KP626_RS00835 (KP626_00835) - 181600..182262 (-) 663 WP_395977416.1 Crp/Fnr family transcriptional regulator -
  KP626_RS00840 (KP626_00840) - 182539..183420 (+) 882 WP_395977418.1 aminoglycoside phosphotransferase family protein -
  KP626_RS00845 (KP626_00845) - 183642..184082 (+) 441 WP_395977420.1 MarR family winged helix-turn-helix transcriptional regulator -
  KP626_RS00850 (KP626_00850) rcrP 184148..185908 (+) 1761 WP_395977422.1 ABC transporter ATP-binding protein Regulator
  KP626_RS00855 (KP626_00855) rcrQ 185905..187761 (+) 1857 WP_395977424.1 ABC transporter ATP-binding protein Regulator
  KP626_RS00860 (KP626_00860) - 187884..189080 (+) 1197 WP_395977426.1 MFS transporter -
  KP626_RS00865 (KP626_00865) - 189249..189539 (+) 291 WP_395977428.1 hypothetical protein -
  KP626_RS00870 (KP626_00870) - 189529..190431 (+) 903 WP_395977430.1 F0F1 ATP synthase subunit A -
  KP626_RS00875 (KP626_00875) atpE 190465..190695 (+) 231 WP_395977432.1 ATP synthase F0 subunit C -
  KP626_RS00880 (KP626_00880) atpF 190714..191190 (+) 477 WP_395977434.1 F0F1 ATP synthase subunit B -
  KP626_RS00885 (KP626_00885) - 191195..191413 (+) 219 WP_395977436.1 F0F1 ATP synthase subunit delta -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68420.17 Da        Isoelectric Point: 8.0581

>NTDB_id=576412 KP626_RS00855 WP_395977424.1 185905..187761(+) (rcrQ) [Christensenella sp. MSJ-20]
MSERKERRHGRGPMGGGPPHMRGPGEKPKNFKKTMGKLIRHCRKYLPAMLIALVAAAAGTVLQIIGPDWIKSLTNEISKG
LPALVNGVPVANSIDMTAVANICWTLVFFYAGAMLLNFIQSFIMATVTQKVSRGLRTDISKKINRLPLRYFDQTSYGDVL
SRVTNDVDTIGQTMNQSVSTLVTSVTMFFGALFMMFYNSWILALTAVGASLIGFVLMMIIMRRSQKYFVAQQNELGNING
HIEEIYSGHSVVKVYNGSREARKTFEEINSKLYNSAWKSQFLSGLMMPLMNFVGNLGYVAVCVVGATLAMNGAISFGVIV
AFMIYIRLFTQPLSQIAQAFNNLQRTAAAGERVFAFLGEEELSDESGKAQRLTDVKGAVEFRHMKFGYTPYKTVIHDFSA
KVEPGQKIAIVGPTGAGKTTIVNLLMRFYELDDGEILLDGVPTNRVPRENVHEQFGMVLQDTWLFEGTIRENIVYCKPGV
TDQEVEDACKTVGLHHFIMTLPDGYDTVLNDKASLSEGQKQLITIARAMIQNAPLLILDEATSSVDTRTERIVQAAMDQL
TVGRTSFVIAHRLSTIKNADLILVMRDGDIIESGSHEELLQKGGFYAELYNSQFEDAA

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=576412 KP626_RS00855 WP_395977424.1 185905..187761(+) (rcrQ) [Christensenella sp. MSJ-20]
ATGAGCGAGCGGAAAGAAAGACGGCATGGAAGGGGACCCATGGGCGGAGGGCCGCCCCATATGCGGGGACCTGGAGAAAA
GCCGAAGAATTTTAAGAAAACAATGGGGAAATTGATCCGCCACTGCAGAAAATACCTTCCAGCCATGCTGATCGCACTGG
TGGCGGCCGCTGCGGGCACGGTGCTGCAGATCATTGGTCCCGACTGGATTAAGAGCCTGACCAATGAGATCAGCAAGGGA
TTACCGGCTTTGGTGAACGGCGTACCGGTGGCAAACAGCATCGATATGACCGCCGTGGCCAATATCTGCTGGACGCTAGT
GTTCTTCTATGCTGGCGCTATGTTGCTAAACTTTATCCAGAGTTTTATCATGGCGACGGTGACCCAGAAGGTAAGCCGTG
GTCTGCGCACCGACATCTCCAAGAAGATCAACAGATTGCCCCTTCGGTACTTTGATCAAACCAGCTACGGTGACGTGCTG
AGCCGTGTGACCAACGACGTGGACACCATCGGCCAGACCATGAACCAGAGCGTCAGTACCCTGGTGACCTCCGTTACCAT
GTTCTTTGGCGCCCTCTTTATGATGTTCTACAATAGCTGGATTCTGGCGCTGACGGCGGTGGGAGCCAGCCTCATTGGAT
TCGTGCTGATGATGATCATCATGCGGAGGTCTCAGAAGTACTTTGTGGCACAGCAAAACGAGTTGGGGAACATCAACGGC
CATATAGAGGAAATCTACTCCGGGCACAGCGTGGTTAAGGTATACAACGGCAGCAGAGAGGCCCGGAAGACCTTTGAGGA
GATCAACAGCAAACTCTATAACAGCGCTTGGAAGTCCCAGTTCCTATCCGGCCTTATGATGCCTCTGATGAACTTCGTAG
GCAATTTGGGATATGTGGCGGTATGTGTGGTGGGTGCGACCTTGGCTATGAACGGAGCCATCTCCTTTGGCGTGATCGTA
GCGTTTATGATCTATATCCGCCTGTTCACCCAGCCTTTGAGCCAGATCGCCCAAGCCTTCAACAACCTGCAGCGGACGGC
CGCCGCCGGCGAGCGGGTATTTGCCTTTTTAGGAGAGGAGGAACTATCGGACGAGAGCGGCAAGGCCCAGCGGCTAACGG
ACGTAAAGGGCGCCGTGGAATTCCGCCACATGAAGTTTGGATACACCCCTTATAAGACCGTAATCCACGACTTCTCCGCC
AAGGTGGAGCCCGGCCAGAAGATCGCCATCGTGGGGCCCACCGGAGCCGGAAAGACCACCATTGTCAACCTGTTGATGCG
GTTTTATGAACTGGACGACGGCGAGATTCTCCTGGATGGGGTTCCCACCAACCGAGTCCCAAGGGAGAACGTGCATGAGC
AGTTCGGCATGGTGCTTCAGGATACCTGGTTGTTTGAAGGAACCATCCGGGAGAACATCGTCTACTGCAAACCCGGTGTA
ACCGATCAAGAGGTGGAGGATGCCTGCAAGACGGTTGGATTGCATCATTTCATCATGACCCTGCCCGACGGCTATGACAC
TGTTCTAAACGACAAGGCCAGCCTATCCGAGGGACAGAAACAGCTCATTACCATTGCGCGTGCCATGATCCAGAACGCCC
CCCTTCTGATCCTGGATGAAGCCACCAGCTCGGTAGATACCCGGACGGAGCGGATCGTTCAGGCGGCCATGGATCAGTTG
ACGGTTGGACGCACCTCCTTTGTTATCGCGCACCGGCTGTCCACCATTAAAAACGCCGATTTGATCCTGGTCATGCGGGA
TGGCGATATCATCGAGAGCGGCAGCCATGAGGAACTGCTGCAAAAGGGCGGCTTCTATGCCGAACTCTATAACAGTCAAT
TTGAGGACGCGGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(396-543)

ABC transporter transmembrane region (ABC_membrane)

(49-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.188

94.66

0.513