Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG09_RS03950 Genome accession   NZ_CP094150
Coordinates   843780..844982 (+) Length   400 a.a.
NCBI ID   WP_245026253.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe022     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 838780..849982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG09_RS03935 (MPG09_03935) - 840823..840957 (+) 135 WP_000738749.1 hypothetical protein -
  MPG09_RS03940 (MPG09_03940) - 840950..842119 (+) 1170 WP_245026249.1 VirB8/TrbF family protein -
  MPG09_RS03945 (MPG09_03945) - 842116..843783 (+) 1668 WP_245026251.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG09_RS03950 (MPG09_03950) comB10 843780..844982 (+) 1203 WP_245026253.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG09_RS03955 (MPG09_03955) - 844966..847179 (+) 2214 WP_245026256.1 collagen-like protein -
  MPG09_RS03960 (MPG09_03960) - 847192..848169 (+) 978 WP_180506174.1 hypothetical protein -
  MPG09_RS03965 (MPG09_03965) - 848186..848461 (+) 276 WP_245026258.1 hypothetical protein -
  MPG09_RS03970 (MPG09_03970) - 848466..849410 (+) 945 WP_245026260.1 CpaF/VirB11 family protein -
  MPG09_RS03975 (MPG09_03975) - 849407..849925 (+) 519 WP_024116502.1 hypothetical protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44780.50 Da        Isoelectric Point: 10.0240

>NTDB_id=576410 MPG09_RS03950 WP_245026253.1 843780..844982(+) (comB10) [Helicobacter pylori strain Hpfe022]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=576410 MPG09_RS03950 WP_245026253.1 843780..844982(+) (comB10) [Helicobacter pylori strain Hpfe022]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAGGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.69

98.25

0.528