Detailed information NTG0576404

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KP625_RS05775
• Genome accession: NZ_CP076562
• Coordinates: 1238131..1239522 (-)
• Length: 463 a.a.
• NCBI ID: WP_238299732.1
• Uniprot ID: -
• Organism: Eubacterium sp. MSJ-33
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1233131..1244522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KP625_RS05775 (KP625_05775)	radA	1238131..1239522 (-)	1392	WP_238299732.1	DNA repair protein RadA	Machinery gene
KP625_RS05780 (KP625_05780)	-	1239569..1239982 (-)	414	WP_238299733.1	endosialidase	-
KP625_RS05785 (KP625_05785)	-	1240110..1242548 (-)	2439	WP_238299734.1	ATP-dependent Clp protease ATP-binding subunit	-
KP625_RS05790 (KP625_05790)	-	1242545..1242946 (-)	402	WP_238299735.1	GntR family transcriptional regulator	-
KP625_RS05795 (KP625_05795)	purD	1242965..1244236 (-)	1272	WP_177970471.1	phosphoribosylamine--glycine ligase	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 50502.65 Da
• Isoelectric Point: 7.7904

>NTDB_id=576404 KP625_RS05775 WP_238299732.1 1238131..1239522(-) (radA) [Eubacterium sp. MSJ-33]
MAALLLYKEKTMAAKEKQIFFCKECGYESAKWQGQCPGCRAWNTFVEEKVKVGTKGSVKQPKDAVTPMGILQVTTAEESR
VQTGMRELDRVLGGGIVKGSLVLVGGDPGIGKSTILLQMCRNLVHQNVNVLYVSGEESLSQIKMRAERIGVFEKDMLLLC
DNDMDNIERVITKSNASVVIIDSIQTMVVEEVGSAPGTVTQVREVTARLMQVAKQYGIAIFIVGHVTKEGNVAGPRTLEH
MVDSVLYFEGDRNHGFRILRGVKNRFGSTNEIGVFTMTEKGLEEVDNPSQALLNGRPQNVSGSVVVSSLEGTRPILVELQ
ALVCQTNFNMPRRTSVGIDYNRVNLILAVMEKRVGMNLWGYDAYVNIAGGMKVNDTAVDLGVAFAIASSMNNKVVPSDTM
IIGEIGLAGEIRGVTNVLQRVKEADKMGFATCIIPKSNYDKAMDKLNVKILCVSTLVEALSLL

Nucleotide

• Length: 1392 bp

>NTDB_id=576404 KP625_RS05775 WP_238299732.1 1238131..1239522(-) (radA) [Eubacterium sp. MSJ-33]
ATGGCAGCTCTTTTGTTGTATAAGGAGAAAACGATGGCAGCGAAGGAAAAACAGATATTTTTTTGTAAAGAATGTGGATA
TGAGTCTGCAAAATGGCAGGGACAGTGTCCCGGATGCCGTGCGTGGAATACATTTGTAGAAGAAAAGGTAAAGGTTGGAA
CAAAGGGAAGTGTGAAACAACCAAAGGATGCGGTAACTCCTATGGGAATCCTTCAGGTGACGACTGCAGAGGAAAGCCGT
GTGCAGACAGGAATGCGGGAATTGGACCGTGTACTTGGTGGTGGTATCGTCAAAGGCTCCCTGGTCCTGGTCGGTGGTGA
TCCGGGAATCGGAAAATCTACTATTTTATTACAGATGTGCCGGAATTTGGTACATCAGAATGTAAACGTACTGTATGTCT
CGGGTGAGGAGTCTTTATCACAGATAAAAATGCGTGCAGAGCGGATTGGGGTATTCGAAAAAGATATGCTTCTTCTTTGT
GACAATGATATGGATAATATTGAGCGGGTGATTACAAAAAGCAATGCGAGCGTGGTGATCATTGACTCTATACAGACCAT
GGTAGTAGAAGAGGTTGGTTCGGCACCCGGTACAGTGACACAGGTAAGGGAAGTGACGGCGCGGCTGATGCAGGTAGCAA
AGCAGTACGGGATTGCTATCTTTATTGTCGGACATGTTACAAAAGAAGGGAATGTGGCAGGCCCACGTACGTTGGAGCAT
ATGGTGGATTCGGTCTTATATTTTGAAGGAGACCGGAATCATGGGTTCCGTATTTTGCGTGGCGTGAAAAACCGATTTGG
ATCTACAAATGAGATCGGAGTTTTCACAATGACCGAAAAAGGATTAGAAGAAGTCGATAATCCTTCACAGGCGCTCTTAA
ATGGTCGCCCGCAGAATGTATCAGGTTCTGTTGTAGTATCTTCCTTAGAGGGAACACGACCAATCTTAGTAGAATTGCAG
GCACTTGTCTGTCAGACGAATTTTAATATGCCACGCCGGACATCGGTAGGAATCGATTATAACCGCGTGAATCTGATTCT
GGCAGTTATGGAAAAACGTGTTGGCATGAATCTGTGGGGATATGATGCGTATGTGAATATCGCCGGTGGTATGAAAGTAA
ATGATACTGCTGTTGACCTGGGCGTTGCGTTTGCAATTGCATCAAGCATGAATAATAAAGTGGTACCGAGTGATACTATG
ATTATCGGAGAGATTGGACTTGCCGGAGAGATTCGTGGTGTCACAAATGTATTGCAACGCGTGAAAGAAGCAGATAAGAT
GGGCTTTGCTACATGTATTATTCCGAAATCAAACTATGATAAGGCAATGGATAAACTCAATGTAAAAATCCTGTGTGTAT
CGACATTGGTAGAGGCACTTTCCTTGCTATGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (21-47)

• Subunit ChlI of Mg-chelatase (ChlI) (363-438)

• AAA domain (AAA_25) (76-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.993	97.408	0.516
radA	Streptococcus mitis SK321	51.116	96.76	0.495
radA	Streptococcus mitis NCTC 12261	51.116	96.76	0.495
radA	Streptococcus pneumoniae Rx1	51.116	96.76	0.495
radA	Streptococcus pneumoniae D39	51.116	96.76	0.495
radA	Streptococcus pneumoniae R6	51.116	96.76	0.495
radA	Streptococcus pneumoniae TIGR4	51.116	96.76	0.495