Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG09_RS02840 Genome accession   NZ_CP094150
Coordinates   591785..592336 (+) Length   183 a.a.
NCBI ID   WP_245027641.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586785..597336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG09_RS02825 (MPG09_02825) cysS 586965..588362 (-) 1398 WP_245027638.1 cysteine--tRNA ligase -
  MPG09_RS02830 (MPG09_02830) murJ 588363..589823 (-) 1461 WP_245027639.1 murein biosynthesis integral membrane protein MurJ -
  MPG09_RS02835 (MPG09_02835) - 589916..591760 (+) 1845 WP_245027640.1 FapA family protein -
  MPG09_RS02840 (MPG09_02840) ruvA 591785..592336 (+) 552 WP_245027641.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG09_RS02845 (MPG09_02845) - 592462..595161 (+) 2700 WP_245027642.1 DUF3519 domain-containing protein -
  MPG09_RS02850 (MPG09_02850) - 595121..595319 (+) 199 Protein_545 hypothetical protein -
  MPG09_RS07715 - 595316..595447 (+) 132 WP_280637960.1 hypothetical protein -
  MPG09_RS02855 (MPG09_02855) - 595434..595799 (+) 366 WP_245027643.1 hypothetical protein -
  MPG09_RS02860 (MPG09_02860) - 595831..596967 (-) 1137 WP_180472872.1 NAD-binding protein -
  MPG09_RS02865 (MPG09_02865) rpmB 597117..597305 (-) 189 WP_058338995.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20154.78 Da        Isoelectric Point: 9.4305

>NTDB_id=576404 MPG09_RS02840 WP_245027641.1 591785..592336(+) (ruvA) [Helicobacter pylori strain Hpfe022]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSVEINKV
LKTLKPNLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=576404 MPG09_RS02840 WP_245027641.1 591785..592336(+) (ruvA) [Helicobacter pylori strain Hpfe022]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGTCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAGCATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACCAGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGTTGAGATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

95.628

100

0.956
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361