Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KP625_RS02240 Genome accession   NZ_CP076562
Coordinates   489307..491151 (+) Length   614 a.a.
NCBI ID   WP_238299060.1    Uniprot ID   -
Organism   Eubacterium sp. MSJ-33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 484307..496151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP625_RS02220 (KP625_02215) rpsB 484978..485718 (+) 741 WP_238299057.1 30S ribosomal protein S2 -
  KP625_RS02225 (KP625_02220) tsf 485746..486684 (+) 939 WP_177970762.1 translation elongation factor Ts -
  KP625_RS02230 (KP625_02225) - 486776..487435 (+) 660 WP_238299058.1 HAD family hydrolase -
  KP625_RS02235 (KP625_02230) rcrP 487547..489307 (+) 1761 WP_238299059.1 ABC transporter ATP-binding protein Regulator
  KP625_RS02240 (KP625_02235) rcrQ 489307..491151 (+) 1845 WP_238299060.1 ABC transporter ATP-binding protein Regulator
  KP625_RS02245 (KP625_02240) - 491221..492783 (+) 1563 WP_238299061.1 collagen-binding domain-containing protein -
  KP625_RS02250 (KP625_02245) - 492863..494413 (+) 1551 WP_238299890.1 family 10 glycosylhydrolase -
  KP625_RS02255 (KP625_02250) rimP 494535..494999 (+) 465 WP_238299062.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68128.99 Da        Isoelectric Point: 6.9140

>NTDB_id=576399 KP625_RS02240 WP_238299060.1 489307..491151(+) (rcrQ) [Eubacterium sp. MSJ-33]
MEKDNYEIGQNNRAPKVSRHGPGRGMHPGEKAKNFKGTWAKLLANCRKYWGAMIFAIICAGIGTVLTLIGPDKLSEMTDL
ITDGVMTGIDMDGIKRIGITLICFYGCSALLSLIQNLIMGYVTQQVSKGLRSNISKKINRLPMWFYNQTSTGDVLSRVTN
DVDTIAQSFNQSMGNLVTAVTLLIGSLIMMLKTDITMTIAAVFSTLLGFVFMTLIMSKSQKYFARQQVHLGEINGHVEEI
YAGHTVVKAYNGEAKSKAKFDEMNENLRDSAFKAQCLSGLMMPLMTFIGNLGYVAVCIVGALLAMNDKISFGVIIAFMMY
VRYFTQPLSQIAQAMQALQSAAAAGERVFEFTDAEEMEDESAKTKKLSDVKGEVSFEHVKFGYKDSDKIVIHDFSAIAKP
GQKVAIVGPTGAGKTTMVNLLMRFHEILDGDIKIDGVSIKEMTREEVHNQFCMVLQDTWLFEGTVRENLVYSQENVPEEK
IEQACKAVGLHRFIRSLPKGYDTVLNDQVNLSQGQKQQLTIARAMIADRPMLILDEATSSVDTRTELIIQRAMDELMKGR
TSFVIAHRLSTIKNADLILVLKDGDIIESGTHEELLAKKGFYADLYNSQFEQAS

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=576399 KP625_RS02240 WP_238299060.1 489307..491151(+) (rcrQ) [Eubacterium sp. MSJ-33]
ATGGAAAAAGATAATTATGAAATCGGTCAGAATAATCGTGCTCCCAAAGTTTCTCGTCACGGACCTGGCAGAGGTATGCA
CCCTGGTGAAAAAGCAAAGAATTTCAAAGGAACATGGGCAAAGCTTCTTGCAAATTGCAGAAAATACTGGGGAGCTATGA
TTTTTGCAATTATCTGCGCAGGCATTGGAACGGTATTAACATTGATCGGACCGGATAAATTATCCGAGATGACGGATCTA
ATCACCGATGGCGTGATGACCGGAATTGATATGGATGGAATCAAGCGGATTGGAATTACGCTGATTTGCTTCTATGGATG
CAGTGCATTATTGTCACTGATCCAGAACTTGATTATGGGATATGTCACACAGCAGGTGTCAAAAGGACTTCGAAGCAATA
TTTCTAAGAAAATCAATCGTCTGCCGATGTGGTTTTATAATCAGACATCAACCGGTGATGTGTTATCCCGTGTGACGAAT
GATGTTGATACGATTGCGCAGTCCTTTAACCAGAGTATGGGTAATCTGGTTACAGCTGTTACACTTTTGATCGGATCACT
CATTATGATGCTCAAGACAGATATCACAATGACGATTGCAGCGGTCTTTTCAACATTGCTTGGGTTTGTATTCATGACTT
TAATCATGAGTAAGTCACAGAAATATTTTGCAAGACAGCAGGTGCATTTAGGCGAAATTAATGGGCATGTCGAAGAAATA
TACGCTGGACATACGGTTGTGAAGGCGTATAATGGTGAGGCAAAATCAAAGGCGAAGTTCGATGAGATGAACGAGAACTT
AAGAGATAGTGCATTTAAAGCACAGTGTCTCTCCGGACTGATGATGCCACTTATGACATTTATTGGAAACCTTGGATATG
TAGCAGTCTGTATCGTCGGTGCACTGCTTGCAATGAATGATAAGATTTCGTTTGGTGTAATTATTGCATTTATGATGTAT
GTTCGTTACTTTACACAACCACTCAGTCAGATTGCACAGGCGATGCAGGCATTGCAGTCTGCGGCTGCTGCCGGTGAGCG
TGTATTTGAGTTTACCGATGCTGAGGAGATGGAAGACGAGAGTGCAAAGACGAAGAAACTTTCCGATGTCAAGGGTGAGG
TATCCTTCGAGCATGTCAAGTTTGGCTATAAGGATAGTGACAAGATTGTTATCCATGACTTCTCTGCTATCGCAAAACCG
GGACAGAAGGTGGCAATTGTAGGACCGACAGGTGCCGGTAAAACAACCATGGTGAATCTTCTGATGCGATTCCATGAGAT
CTTAGATGGTGATATCAAGATCGATGGTGTATCAATCAAAGAAATGACACGGGAAGAGGTTCATAACCAGTTCTGTATGG
TACTGCAGGATACATGGCTTTTTGAAGGAACGGTACGGGAGAATCTTGTATATAGTCAGGAGAATGTACCGGAAGAAAAA
ATCGAGCAGGCATGTAAAGCAGTTGGTCTGCATCGATTTATCCGAAGTCTGCCAAAAGGCTATGATACGGTATTAAATGA
TCAGGTAAATCTGTCACAGGGACAGAAACAGCAGCTTACAATCGCCCGTGCAATGATTGCAGATCGCCCGATGTTGATTT
TGGATGAGGCAACGAGTTCAGTAGATACAAGAACTGAGCTTATCATCCAGAGAGCGATGGATGAACTGATGAAGGGAAGA
ACATCATTTGTAATTGCACACCGGCTTTCCACGATCAAGAATGCCGATTTGATTCTTGTATTGAAGGATGGCGATATCAT
CGAGAGTGGTACGCATGAAGAACTGCTTGCAAAGAAGGGCTTTTATGCAGATCTGTATAACAGTCAGTTTGAGCAGGCAT
CTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-328)

ABC transporter (ABC_tran)

(393-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.633

94.951

0.547