Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KP625_RS02235 Genome accession   NZ_CP076562
Coordinates   487547..489307 (+) Length   586 a.a.
NCBI ID   WP_238299059.1    Uniprot ID   -
Organism   Eubacterium sp. MSJ-33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 482547..494307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP625_RS02205 (KP625_02200) - 483183..483488 (+) 306 WP_238299054.1 hypothetical protein -
  KP625_RS02210 (KP625_02205) - 483505..484227 (+) 723 WP_238299055.1 DUF6115 domain-containing protein -
  KP625_RS02215 (KP625_02210) - 484227..484775 (+) 549 WP_238299056.1 endolytic transglycosylase MltG -
  KP625_RS02220 (KP625_02215) rpsB 484978..485718 (+) 741 WP_238299057.1 30S ribosomal protein S2 -
  KP625_RS02225 (KP625_02220) tsf 485746..486684 (+) 939 WP_177970762.1 translation elongation factor Ts -
  KP625_RS02230 (KP625_02225) - 486776..487435 (+) 660 WP_238299058.1 HAD family hydrolase -
  KP625_RS02235 (KP625_02230) rcrP 487547..489307 (+) 1761 WP_238299059.1 ABC transporter ATP-binding protein Regulator
  KP625_RS02240 (KP625_02235) rcrQ 489307..491151 (+) 1845 WP_238299060.1 ABC transporter ATP-binding protein Regulator
  KP625_RS02245 (KP625_02240) - 491221..492783 (+) 1563 WP_238299061.1 collagen-binding domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65189.99 Da        Isoelectric Point: 5.3017

>NTDB_id=576398 KP625_RS02235 WP_238299059.1 487547..489307(+) (rcrP) [Eubacterium sp. MSJ-33]
MLRIFKNFRKQEVVLALFSVVFVVAQVWLELKLPDYMREITSLITTQDSAMHDILIAGGKMLLCAFGSLLVTILVAVCAS
RIASNFSAIVRGKLFDKVQSFSMEEIGRFSTASLITRSTNDVTQVQMLIVMGLSIMLRAPIMAVMAILKIVDKSWQWTLS
TGVAVVVLLVVVIICVSLCMPKFKRLQSLTDEINQVTRENLTGLNVVRAYNAEAYQEEKFEKVNKDLTDTHWFTSKTMAF
MMPTIMMIMNGLSLAIYWIGAVLINDAQDMQGKFTLFSDMVVFSSYAMQVVMSFMMLVMIFIMLPRASVAAKRILEVLDT
EPSIEDGMRDTFPVMKDGEVEFKDVSFKYPDAEEYVLEHISFSAKKGETIAFIGATGCGKSTAINLIPRFYDVTEGEVLV
DGVNVKEYTQEALHNKIGYVSQKAILFSGTIAENVAYGENGKAPATQDDIARAVSVAQASEFIEKKNQGFGGYVAQGGSN
FSGGQKQRLSIARAIARQPEILIFDDSFSALDYKTDRILREALHKECRDATKIIVAQRIGTIRDADKIIVLDDGQIAGMG
SHDELMKNCEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=576398 KP625_RS02235 WP_238299059.1 487547..489307(+) (rcrP) [Eubacterium sp. MSJ-33]
ATGTTACGTATTTTTAAGAATTTCCGAAAACAGGAAGTGGTATTGGCTCTTTTCAGTGTGGTATTTGTAGTGGCACAGGT
CTGGCTTGAGTTAAAACTGCCGGATTACATGCGGGAAATTACATCACTGATTACGACACAGGATAGTGCAATGCATGATA
TCCTGATTGCAGGTGGAAAAATGTTACTTTGTGCGTTTGGCAGTTTATTAGTAACTATATTGGTTGCTGTCTGTGCATCG
CGGATTGCTTCAAATTTCAGCGCAATTGTGCGTGGAAAATTATTTGACAAGGTACAGTCGTTTTCAATGGAGGAGATTGG
TCGGTTTTCGACTGCCAGTTTGATCACACGATCTACAAATGATGTGACACAGGTACAGATGTTGATTGTTATGGGACTTT
CCATCATGCTGCGGGCACCGATCATGGCGGTGATGGCTATCTTGAAGATTGTTGATAAGAGCTGGCAGTGGACACTCTCC
ACGGGCGTTGCGGTTGTTGTATTATTGGTTGTCGTTATTATCTGCGTTAGCTTATGTATGCCGAAGTTCAAACGCTTACA
GAGTCTGACGGATGAAATCAATCAGGTAACACGTGAGAATCTGACAGGCTTGAACGTTGTTCGCGCCTATAATGCGGAAG
CATATCAGGAGGAGAAGTTCGAGAAGGTCAACAAGGATCTGACAGATACCCATTGGTTTACATCAAAGACTATGGCATTT
ATGATGCCGACGATTATGATGATCATGAATGGTCTTTCGCTTGCAATATATTGGATTGGCGCGGTTTTGATCAACGATGC
ACAGGATATGCAGGGAAAATTCACGTTATTCTCGGATATGGTTGTATTTTCTTCCTATGCGATGCAGGTTGTCATGTCGT
TCATGATGCTAGTTATGATTTTCATTATGCTGCCGAGAGCTTCCGTTGCAGCAAAGCGAATCCTGGAGGTATTAGACACC
GAGCCATCCATCGAGGATGGGATGAGAGATACTTTCCCGGTTATGAAGGATGGAGAAGTGGAATTTAAGGATGTCAGCTT
TAAATATCCGGATGCAGAGGAATATGTACTTGAACATATTTCTTTTTCTGCGAAGAAGGGTGAGACAATCGCATTTATCG
GTGCAACCGGATGTGGAAAGAGTACTGCAATTAACCTGATCCCTCGGTTTTATGACGTGACAGAAGGTGAAGTTCTGGTT
GATGGTGTGAATGTAAAAGAATATACACAGGAAGCACTGCATAATAAGATTGGATATGTCAGCCAGAAGGCAATCTTGTT
TTCCGGTACAATCGCAGAGAATGTGGCGTATGGTGAAAATGGAAAGGCGCCTGCGACGCAGGATGACATTGCGCGTGCTG
TCAGTGTAGCGCAGGCGAGTGAATTTATAGAGAAGAAGAATCAGGGTTTTGGTGGCTATGTGGCTCAGGGTGGTTCGAAC
TTCTCAGGTGGACAGAAACAGCGTTTGTCGATTGCGCGGGCGATTGCCAGACAACCGGAGATTTTAATCTTTGATGATTC
ATTTTCTGCGCTTGACTATAAAACAGATCGTATTCTTAGAGAAGCACTGCATAAGGAATGTAGGGATGCAACGAAGATTA
TCGTTGCACAGCGAATTGGAACAATTCGTGATGCGGATAAGATTATCGTGTTGGATGATGGACAGATTGCCGGTATGGGA
TCGCATGACGAGCTTATGAAGAATTGTGAAGTATACCAGGAAATTGCATATTCTCAGTTATCAAAGGAGGAACTTGCATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-507)

ABC transporter transmembrane region (ABC_membrane)

(18-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.013

100

0.529