Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPF84_RS05475 Genome accession   NZ_CP094149
Coordinates   1143777..1145702 (+) Length   641 a.a.
NCBI ID   WP_245085201.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1138777..1150702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF84_RS05450 (MPF84_05450) hofB 1138975..1140414 (-) 1440 WP_245085189.1 outer membrane beta-barrel protein HofB -
  MPF84_RS05455 (MPF84_05455) pyrB 1140710..1141633 (-) 924 WP_245085192.1 aspartate carbamoyltransferase -
  MPF84_RS05460 (MPF84_05460) - 1141700..1142215 (+) 516 WP_000523553.1 hypothetical protein -
  MPF84_RS05465 (MPF84_05465) - 1142215..1142922 (+) 708 WP_245085195.1 TlyA family RNA methyltransferase -
  MPF84_RS05470 (MPF84_05470) - 1142888..1143730 (+) 843 WP_245085198.1 bifunctional riboflavin kinase/FAD synthetase -
  MPF84_RS05475 (MPF84_05475) recP/tkt 1143777..1145702 (+) 1926 WP_245085201.1 transketolase Machinery gene
  MPF84_RS05480 (MPF84_05480) - 1145699..1148035 (+) 2337 WP_245085203.1 PD-(D/E)XK nuclease family protein -
  MPF84_RS05485 (MPF84_05485) - 1148032..1150584 (+) 2553 WP_245085207.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70427.62 Da        Isoelectric Point: 6.5780

>NTDB_id=576377 MPF84_RS05475 WP_245085201.1 1143777..1145702(+) (recP/tkt) [Helicobacter pylori strain Hpfe023]
MRLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQTALSLSTPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLVEQDENYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=576377 MPF84_RS05475 WP_245085201.1 1143777..1145702(+) (recP/tkt) [Helicobacter pylori strain Hpfe023]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGTGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTTAATAGAGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAATCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATCAATATTAGTTTTAGCGAACAGGTCAAGATGCGGTTTTTGGCACAAAATTGGG
AAGTGCTAGAATGTGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTAATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCTTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGTATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCGT
CTAACAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGACTACTT
GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGATGGGGCGACGCACCAACCCATAGAGCAATTGAGTCATTTACGCGCTTTACCCAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAACAGCGTTAAGCTTGAGCACTCCTAGCGGACTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAAGTTTTAAAAGGTGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGTGAAGTCTCTTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAACTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTGATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTCAGCGTTGAAAACATCACCGCTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.475

100

0.421