Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF84_RS02450 Genome accession   NZ_CP094149
Coordinates   503161..503445 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe023     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498161..508445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF84_RS02430 (MPF84_02430) - 498801..501102 (+) 2302 Protein_471 dynamin family protein -
  MPF84_RS02435 (MPF84_02435) - 501102..501815 (+) 714 WP_245086293.1 dynamin family protein -
  MPF84_RS02440 (MPF84_02440) - 501793..502581 (+) 789 WP_245086296.1 integrase -
  MPF84_RS02445 (MPF84_02445) - 502685..503164 (+) 480 WP_245086299.1 hypothetical protein -
  MPF84_RS02450 (MPF84_02450) comB2 503161..503445 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPF84_RS02455 (MPF84_02455) comB3 503456..503719 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPF84_RS02460 (MPF84_02460) - 503730..503966 (+) 237 WP_180386948.1 hypothetical protein -
  MPF84_RS02465 (MPF84_02465) comB4 503966..506542 (+) 2577 WP_245086302.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF84_RS02470 (MPF84_02470) - 506539..506679 (+) 141 WP_015643441.1 hypothetical protein -
  MPF84_RS02475 (MPF84_02475) - 506672..507811 (+) 1140 WP_245052287.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=576360 MPF84_RS02450 WP_000736478.1 503161..503445(+) (comB2) [Helicobacter pylori strain Hpfe023]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=576360 MPF84_RS02450 WP_000736478.1 503161..503445(+) (comB2) [Helicobacter pylori strain Hpfe023]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGAGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553