Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPF84_RS01530 Genome accession   NZ_CP094149
Coordinates   297205..298254 (-) Length   349 a.a.
NCBI ID   WP_245085980.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe023     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 292205..303254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF84_RS01510 (MPF84_01510) rpsL 292980..293387 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPF84_RS01515 (MPF84_01515) rpsG 293403..293870 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPF84_RS01520 (MPF84_01520) fusA 293882..295960 (+) 2079 WP_000101828.1 elongation factor G -
  MPF84_RS01525 (MPF84_01525) - 296690..297016 (+) 327 WP_000744162.1 hypothetical protein -
  MPF84_RS01530 (MPF84_01530) waaF 297205..298254 (-) 1050 WP_245085980.1 lipopolysaccharide heptosyltransferase II Regulator
  MPF84_RS01535 (MPF84_01535) hisS 298316..299644 (+) 1329 WP_245085982.1 histidine--tRNA ligase -
  MPF84_RS01540 (MPF84_01540) asd 299631..300671 (+) 1041 WP_245085984.1 aspartate-semialdehyde dehydrogenase -
  MPF84_RS01545 (MPF84_01545) - 300855..302675 (-) 1821 WP_245085986.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39476.40 Da        Isoelectric Point: 9.8132

>NTDB_id=576357 MPF84_RS01530 WP_245085980.1 297205..298254(-) (waaF) [Helicobacter pylori strain Hpfe023]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNALFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPVSYYAEVSAALLEEGHGIYFFGAKEDAIVSEEILKLIKGLLKNPLSFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAVSAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576357 MPF84_RS01530 WP_245085980.1 297205..298254(-) (waaF) [Helicobacter pylori strain Hpfe023]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
ACTTTTTTACACCCTTAAACACCACTACCCTAACGCGCTTTTTATTTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGTGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGGTAATGGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACTCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGTTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGGAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATCTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAGACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGTTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGTCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

36.95

97.708

0.361