Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG27_RS01595 Genome accession   NZ_CP094147
Coordinates   313669..314718 (-) Length   349 a.a.
NCBI ID   WP_245042842.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe027     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 308669..319718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG27_RS01575 (MPG27_01575) rpsL 309366..309773 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG27_RS01580 (MPG27_01580) rpsG 309789..310256 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG27_RS01585 (MPG27_01585) fusA 310268..312346 (+) 2079 WP_000101828.1 elongation factor G -
  MPG27_RS01590 (MPG27_01590) - 313142..313465 (+) 324 WP_228839871.1 flagellar protein -
  MPG27_RS01595 (MPG27_01595) waaF 313669..314718 (-) 1050 WP_245042842.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG27_RS01600 (MPG27_01600) hisS 314780..316108 (+) 1329 WP_245042844.1 histidine--tRNA ligase -
  MPG27_RS01605 (MPG27_01605) asd 316095..317135 (+) 1041 WP_245042846.1 aspartate-semialdehyde dehydrogenase -
  MPG27_RS01610 (MPG27_01610) - 317563..318690 (+) 1128 WP_245042848.1 DUF874 family protein -
  MPG27_RS01615 (MPG27_01615) - 318933..319676 (-) 744 WP_245042850.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39601.45 Da        Isoelectric Point: 9.6679

>NTDB_id=576274 MPG27_RS01595 WP_245042842.1 313669..314718(-) (waaF) [Helicobacter pylori strain Hpfe027]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPVSYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCTKTSIEELIERIAILDLFITNDSGPMHAAVSTQTPLIALFGPTDEKETSPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576274 MPG27_RS01595 WP_245042842.1 313669..314718(-) (waaF) [Helicobacter pylori strain Hpfe027]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAACCTCCCCACTCACACCCCAAACACTCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGTTTCTTATTATGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTGTTCAAT
AACGCTTACAATCTGTGCACGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGTGGCCCTATGCATGCGGCTGTTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361