Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG51_RS05235 Genome accession   NZ_CP094145
Coordinates   1097658..1099583 (+) Length   641 a.a.
NCBI ID   WP_245033685.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1092658..1104583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG51_RS05210 (MPG51_05210) hofB 1092856..1094295 (-) 1440 WP_245033681.1 outer membrane beta-barrel protein HofB -
  MPG51_RS05215 (MPG51_05215) pyrB 1094591..1095514 (-) 924 WP_001124586.1 aspartate carbamoyltransferase -
  MPG51_RS05220 (MPG51_05220) - 1095581..1096096 (+) 516 WP_000523557.1 hypothetical protein -
  MPG51_RS05225 (MPG51_05225) - 1096096..1096803 (+) 708 WP_245033683.1 TlyA family RNA methyltransferase -
  MPG51_RS05230 (MPG51_05230) - 1096769..1097611 (+) 843 WP_180403512.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG51_RS05235 (MPG51_05235) recP/tkt 1097658..1099583 (+) 1926 WP_245033685.1 transketolase Machinery gene
  MPG51_RS05240 (MPG51_05240) - 1099580..1101916 (+) 2337 WP_245033687.1 PD-(D/E)XK nuclease family protein -
  MPG51_RS05245 (MPG51_05245) - 1101913..1104411 (+) 2499 WP_245033689.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70402.66 Da        Isoelectric Point: 6.6103

>NTDB_id=576249 MPG51_RS05235 WP_245033685.1 1097658..1099583(+) (recP/tkt) [Helicobacter pylori strain Hpfe028]
MQLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIVSPKNKINFEEVKVRGVSLEVLWEKSLSPKAKE
KIHALRDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLSAPSGLILSRQNLPVLDEVSKEKVLKGAYVKHHSKNPVITLVASGSEVSLALESAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKMLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=576249 MPG51_RS05235 WP_245033685.1 1097658..1099583(+) (recP/tkt) [Helicobacter pylori strain Hpfe028]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGTGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGACTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTTAATAGGGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGCGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAGGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGAGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTAATGAAAGCTTTATCGTTAGCCCAAAAAACAAAA
TAAATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAGGTCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAGGGATTTTGATTTTAGCGCTATTAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCAT
CCAATAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCCACGCACCAACCCATAGAGCAATTGAGTCATTTGCGCGCTTTGCCTAATTTCTACGCTTTCAGACCCAGC
GATGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGAAGGTTTTAAAAGGGGCGTATGTTAAACACCACTCTAAAAACCCCGTTA
TCACGCTAGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCGCCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAATGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418