Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JNUCC24_RS11250 Genome accession   NZ_CP076532
Coordinates   2243152..2243487 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-24     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2238152..2248487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC24_RS11230 (JNUCC24_11230) gcvT 2238630..2239727 (-) 1098 WP_185853685.1 glycine cleavage system aminomethyltransferase GcvT -
  JNUCC24_RS11235 (JNUCC24_11235) - 2240289..2241959 (+) 1671 WP_024427994.1 DEAD/DEAH box helicase -
  JNUCC24_RS11240 (JNUCC24_11240) - 2241974..2242771 (+) 798 WP_024427993.1 YqhG family protein -
  JNUCC24_RS11245 (JNUCC24_11245) - 2242954..2243118 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  JNUCC24_RS11250 (JNUCC24_11250) sinR 2243152..2243487 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  JNUCC24_RS11255 (JNUCC24_11255) tasA 2243555..2244355 (-) 801 WP_039179929.1 biofilm matrix protein TasA -
  JNUCC24_RS11260 (JNUCC24_11260) sipW 2244413..2244985 (-) 573 WP_185853686.1 signal peptidase I SipW -
  JNUCC24_RS11265 (JNUCC24_11265) tapA 2245038..2245565 (-) 528 WP_103131952.1 amyloid fiber anchoring/assembly protein TapA -
  JNUCC24_RS11270 (JNUCC24_11270) - 2245865..2246143 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  JNUCC24_RS11275 (JNUCC24_11275) - 2246178..2246372 (-) 195 WP_024422974.1 YqzE family protein -
  JNUCC24_RS11280 (JNUCC24_11280) comGG 2246432..2246815 (-) 384 WP_103131951.1 competence type IV pilus minor pilin ComGG -
  JNUCC24_RS11285 (JNUCC24_11285) comGF 2246812..2247339 (-) 528 WP_258011119.1 competence type IV pilus minor pilin ComGF -
  JNUCC24_RS11290 (JNUCC24_11290) comGE 2247251..2247565 (-) 315 WP_073206282.1 competence type IV pilus minor pilin ComGE -
  JNUCC24_RS11295 (JNUCC24_11295) comGD 2247549..2247995 (-) 447 WP_185853687.1 competence type IV pilus minor pilin ComGD -
  JNUCC24_RS11300 (JNUCC24_11300) comGC 2247988..2248281 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=576238 JNUCC24_RS11250 WP_024422969.1 2243152..2243487(+) (sinR) [Bacillus sp. JNUCC-24]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=576238 JNUCC24_RS11250 WP_024422969.1 2243152..2243487(+) (sinR) [Bacillus sp. JNUCC-24]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946