Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JNUCC24_RS05090 Genome accession   NZ_CP076532
Coordinates   1052004..1052954 (+) Length   316 a.a.
NCBI ID   WP_024426541.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-24     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047004..1057954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC24_RS05065 (JNUCC24_05065) comK 1047354..1047932 (+) 579 WP_024425481.1 competence protein ComK Regulator
  JNUCC24_RS05070 (JNUCC24_05070) - 1048232..1048714 (+) 483 WP_216100215.1 hypothetical protein -
  JNUCC24_RS05075 (JNUCC24_05075) - 1048745..1050184 (-) 1440 WP_216100217.1 PLP-dependent aminotransferase family protein -
  JNUCC24_RS05080 (JNUCC24_05080) - 1050330..1051499 (+) 1170 WP_185854216.1 MFS transporter -
  JNUCC24_RS05085 (JNUCC24_05085) - 1051564..1051842 (+) 279 WP_185854523.1 barstar family protein -
  JNUCC24_RS05090 (JNUCC24_05090) ceuB 1052004..1052954 (+) 951 WP_024426541.1 ABC transporter permease Machinery gene
  JNUCC24_RS05095 (JNUCC24_05095) - 1052947..1053897 (+) 951 WP_024425487.1 iron chelate uptake ABC transporter family permease subunit -
  JNUCC24_RS05100 (JNUCC24_05100) - 1053888..1054646 (+) 759 WP_185854217.1 ABC transporter ATP-binding protein -
  JNUCC24_RS05105 (JNUCC24_05105) - 1054668..1055612 (+) 945 WP_185854218.1 siderophore ABC transporter substrate-binding protein -
  JNUCC24_RS05110 (JNUCC24_05110) - 1055750..1056703 (+) 954 WP_216100223.1 LCP family protein -
  JNUCC24_RS05115 (JNUCC24_05115) - 1056775..1057137 (-) 363 WP_185854220.1 hypothetical protein -
  JNUCC24_RS05120 (JNUCC24_05120) - 1057294..1057911 (+) 618 WP_024425492.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34960.36 Da        Isoelectric Point: 9.7476

>NTDB_id=576216 JNUCC24_RS05090 WP_024426541.1 1052004..1052954(+) (ceuB) [Bacillus sp. JNUCC-24]
MKLYQLSLLFVCLACISLFVGVQDLSILQLFHLTDEQVHTLVSSRLPRLVSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILVAMLVFTHVNPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=576216 JNUCC24_RS05090 WP_024426541.1 1052004..1052954(+) (ceuB) [Bacillus sp. JNUCC-24]
ATGAAATTGTATCAATTAAGTTTGTTATTTGTATGTTTGGCATGTATATCTCTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGCTGTTTCATTTAACAGATGAACAAGTGCACACGTTAGTTTCAAGCCGCCTCCCGCGTCTCGTGAGTATTGTGC
TTGCTGGTATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGTAGCAATGCTTGTTTTTACACATGTGAATCCGCTTATGAAAATGGG
GATTGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATTT
ATGTACCATTAGTCGGCTTAATGTTTGGGGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATTTGATT
CAAAACGTATCCGCATGGCTTCAAGGAGATTTTTCTCTTATTGTCCAAGGGCGTTATGAACTGCTCTATGTGAGCGTTCC
ACTATTGATCATTGCGTATTTATATGCTGACCGCTTTACAGTGGCAGGCATGGGCGAGAGCTTTGCCGTTAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGGTTGGTGATCGTTTCAATGATTACGTCTGTCACCATTTTAACTGTCGGAATG
CTGCCATTCCTTGGATTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAAAGCCTCCCGCATAC
AGCTTTACTAGGAGCTATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATATCAGTTG
GACTCATGGTAGGCATCATCGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.163

95.253

0.487