Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG16_RS01540 Genome accession   NZ_CP094143
Coordinates   302879..303928 (-) Length   349 a.a.
NCBI ID   WP_245108657.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe032     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 297879..308928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG16_RS01520 (MPG16_01520) rpsL 298591..298998 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG16_RS01525 (MPG16_01525) rpsG 299014..299481 (+) 468 WP_245108656.1 30S ribosomal protein S7 -
  MPG16_RS01530 (MPG16_01530) fusA 299493..301571 (+) 2079 WP_128481039.1 elongation factor G -
  MPG16_RS01535 (MPG16_01535) - 302310..302690 (+) 381 WP_000744161.1 hypothetical protein -
  MPG16_RS01540 (MPG16_01540) waaF 302879..303928 (-) 1050 WP_245108657.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG16_RS01545 (MPG16_01545) hisS 303990..305318 (+) 1329 WP_180616787.1 histidine--tRNA ligase -
  MPG16_RS01550 (MPG16_01550) asd 305305..306345 (+) 1041 WP_245108658.1 aspartate-semialdehyde dehydrogenase -
  MPG16_RS01555 (MPG16_01555) - 306772..308010 (+) 1239 WP_245108659.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39628.56 Da        Isoelectric Point: 9.7383

>NTDB_id=576155 MPG16_RS01540 WP_245108657.1 302879..303928(-) (waaF) [Helicobacter pylori strain Hpfe032]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576155 MPG16_RS01540 WP_245108657.1 302879..303928(-) (waaF) [Helicobacter pylori strain Hpfe032]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTACCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCATACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361