Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   KPA27_RS07980 Genome accession   NZ_CP076517
Coordinates   1608741..1609790 (-) Length   349 a.a.
NCBI ID   WP_044679881.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1603741..1614790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS07960 (KPA27_07960) trpB 1604272..1605447 (-) 1176 WP_044681118.1 tryptophan synthase subunit beta -
  KPA27_RS07965 (KPA27_07965) - 1606267..1606794 (-) 528 WP_002942846.1 VanZ family protein -
  KPA27_RS07970 (KPA27_07970) rlmN 1606791..1607903 (-) 1113 WP_024406668.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  KPA27_RS07975 (KPA27_07975) - 1607912..1608553 (-) 642 WP_014638483.1 YutD-like domain-containing protein -
  KPA27_RS07980 (KPA27_07980) sepM 1608741..1609790 (-) 1050 WP_044679881.1 SepM family pheromone-processing serine protease Regulator
  KPA27_RS07985 (KPA27_07985) coaD 1609777..1610265 (-) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  KPA27_RS07990 (KPA27_07990) rsmD 1610255..1610794 (-) 540 WP_014638485.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KPA27_RS07995 (KPA27_07995) - 1611101..1611823 (-) 723 WP_044679883.1 serine protease -
  KPA27_RS08000 (KPA27_08000) - 1611880..1612266 (-) 387 WP_024400994.1 rhodanese-like domain-containing protein -
  KPA27_RS08005 (KPA27_08005) - 1612266..1612484 (-) 219 WP_004194736.1 YqgQ family protein -
  KPA27_RS08010 (KPA27_08010) - 1612809..1613408 (-) 600 WP_044679884.1 response regulator transcription factor -
  KPA27_RS08015 (KPA27_08015) - 1613405..1614499 (-) 1095 WP_044679885.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37718.71 Da        Isoelectric Point: 4.4632

>NTDB_id=576128 KPA27_RS07980 WP_044679881.1 1608741..1609790(-) (sepM) [Streptococcus suis strain 39565]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIAQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLELGSNVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKEDPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576128 KPA27_RS07980 WP_044679881.1 1608741..1609790(-) (sepM) [Streptococcus suis strain 39565]
ATGAAGAAAAATAGGAAGTTAACCCTAATTGCGTCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATCTGGAAAGTCCAGGTGGAGCTGCTGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAAGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGCTCCTCTGAAGAGATGACAGGAGGAGCCGACAATGAAGAGTATTTCCGTATAGCACAGTTTTACAT
GGAGACATCGCAAAATATGGCAAAGTATCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTACTTGCCTTGGCGGATGATTCGACCTTTAAAAAAGTTCTTAATATTGCCGATACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAACTTGGAAGTAATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAGAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGAATCGGCATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACGGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGAATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGATATTGGTGGGGCTGATAAGAAGGTTATTTCGGCAGCTAAGTCAGGTGCAAGTATCTTTTTCG
TACCAAACAATCCAGTTGATGTGGAAGTTTTGAAGGAAGATCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCT
GCGGAGAAAGCAGGATTGGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605