Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KPA27_RS07025 Genome accession   NZ_CP076517
Coordinates   1403335..1405137 (-) Length   600 a.a.
NCBI ID   WP_216330768.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1398335..1410137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS07000 (KPA27_07000) - 1399776..1400261 (-) 486 WP_044668712.1 LURP-one-related family protein -
  KPA27_RS07005 (KPA27_07005) prsA 1400470..1401471 (-) 1002 WP_044668710.1 peptidylprolyl isomerase PrsA -
  KPA27_RS07010 (KPA27_07010) - 1401534..1402253 (-) 720 WP_043034995.1 O-methyltransferase -
  KPA27_RS07015 (KPA27_07015) - 1402328..1402876 (-) 549 WP_024384845.1 DUF6630 family protein -
  KPA27_RS07020 (KPA27_07020) - 1402887..1403333 (-) 447 WP_044673787.1 hypothetical protein -
  KPA27_RS07025 (KPA27_07025) pepF 1403335..1405137 (-) 1803 WP_216330768.1 oligoendopeptidase F Regulator
  KPA27_RS07030 (KPA27_07030) coiA 1405366..1406307 (-) 942 WP_202847643.1 competence protein CoiA family protein Machinery gene
  KPA27_RS07035 (KPA27_07035) - 1406369..1406935 (+) 567 WP_136581418.1 GNAT family protein -
  KPA27_RS07040 (KPA27_07040) metG 1406964..1408967 (-) 2004 WP_202847642.1 methionine--tRNA ligase -
  KPA27_RS07045 (KPA27_07045) - 1409175..1409924 (-) 750 WP_202847641.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69134.23 Da        Isoelectric Point: 4.5553

>NTDB_id=576119 KPA27_RS07025 WP_216330768.1 1403335..1405137(-) (pepF) [Streptococcus suis strain 39565]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKAKDFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKATGLYSAFSQAFAFYEPEFMAITEEQLEAFKVEEPALVQYSHQFEKLLAAKDHALSQEVEEVLAAT
SEIFEAPSETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVSAVNKHLPLLHRYINMRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEEYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=576119 KPA27_RS07025 WP_216330768.1 1403335..1405137(-) (pepF) [Streptococcus suis strain 39565]
ATGTCTAAACAACGTTATGAAATTGAAGAAAAATACCAGTGGGATTTGACTACTATTTTCCCAACAGATGAGGCTTGGGA
AGCCGAATTGGCTGATTTGCAAGCAGAAACAGAAAAGGCAAAGGACTTTGCTGGTCACTTGCTAGACTCAGCGAAGAGCC
TTTTGGAAATCAGTGAAACGCAACTCGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAAAACGAC
CAAGATACTCGCGAAGGAAAGTATCAGGAATTTCAAGCTAAGGCTACGGGGCTTTATTCTGCCTTTTCACAGGCCTTTGC
TTTCTATGAGCCAGAATTTATGGCCATTACTGAAGAGCAGTTGGAAGCCTTCAAAGTAGAAGAGCCAGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTTTTAGCGGCTAAAGACCATGCCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAGATTTTTGAAGCACCATCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTCCAGTCTAACGTTAAGGTTAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCAGCCCTTTCTGCCAACTTTATCCCAGAGTCCGTTTA
CGATACATTAGTATCAGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATATGCGTAAGAAACTCTTGGGTA
TTGATGATCTTAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCTCTCAAA
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGAGTATTCGGCTATTGTAAAAGAAGCCTTTGAAAACCGCTGGATTGA
CGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCGATTTACAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTATGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGATAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698